Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

927288 .. 929930

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTCTTCTTAGCATTATTCGAAAAATTAAAAGGAAGGAGAAAGAAATACGTATACTCATGGTCGGGCTTGACAATTCGGGAAAAACTACGATTGTGCTGAGGATTAATGGGGAGGACACCAGCGTTTATCTGTTACCATGGTATGGTCGATTGAAATGCTTTTTATTTGATTTTGACAGTTCTGATCTTAGAAGATTAGATGACTGCAAAATGGAGCTTGATAATCTTTTGAAGGAAGAGAGGCTATCAGGATCGTCCTTACTGATACTAGCAAATAAGCAGGACATAAAAGGTGCCCTTACTCCACAAGAAATTGCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGGCTGCTTCAGGGATTTGATTGGTTGGTCCAAGACATTGCCTCTCGGATCTATGTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

6.6

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 42	1.6e-09	ADP-ribosylation factor family
Arf	PF00025	49 - 145	5.3e-25	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	262, 452
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	157, 235, 331
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AlwI	GGATC	2 cut(s)	262, 452
ApeKI	GCWGC	2 cut(s)	375, 400
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	362, 387
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	376, 401
BlsI	GCNGC	2 cut(s)	377, 402
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	140, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	140, 321
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	362, 387
BshNI	GGYRCC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	187, 254, 444
Bsp19I	CCATGG	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	380
BspPI	GGATC	2 cut(s)	262, 452
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	140, 321
BssMI	GATC	3 cut(s)	187, 254, 444
BssNAI	GTATAC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	140, 321
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	11, 101, 191
BstDSI	CCRYGG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	190, 257, 447
BstMBI	GATC	3 cut(s)	187, 254, 444
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	301
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	362, 387
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BstZ17I	GTATAC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	358, 385
Cfr13I	GGNCC	1 cut(s)	424
CviAII	CATG	2 cut(s)	61, 141
CviJI	RGCY	6 cut(s)	70, 220, 247, 341, 375, 400
CviKI_1	RGCY	6 cut(s)	70, 220, 247, 341, 375, 400
DdeI	CTNAG	3 cut(s)	11, 101, 191
DpnI	GATC	3 cut(s)	189, 256, 446
DpnII	GATC	3 cut(s)	187, 254, 444
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco105I	TACGTA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	140, 321
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	389
EcoT14I	CCWWGG	2 cut(s)	140, 321
ErhI	CCWWGG	2 cut(s)	140, 321
FaeI	CATG	2 cut(s)	64, 144
FaiI	YATR	8 cut(s)	56, 62, 142, 147, 290, 344, 385, 450
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	2 cut(s)	60, 140
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	376, 401
Fsp4HI	GCNGC	2 cut(s)	376, 401
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	376, 401
Hin1II	CATG	2 cut(s)	64, 144
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	187, 444
Hpy188III	TCNNGA	2 cut(s)	81, 252
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	31, 229
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	210, 378, 383
HpyF3I	CTNAG	3 cut(s)	11, 101, 191
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	64, 144
Kzo9I	GATC	3 cut(s)	187, 254, 444
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	136, 237, 269, 346, 392
Lsp1109I	GCAGC	2 cut(s)	362, 387
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	3 cut(s)	189, 256, 446
MboI	GATC	3 cut(s)	187, 254, 444
MboII	GAAGA	2 cut(s)	207, 251
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	3 cut(s)	27, 76, 315
MnlI	CCTC	6 cut(s)	96, 109, 237, 331, 388, 448
MseI	TTAA	2 cut(s)	30, 108
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	187, 254, 444
NlaIII	CATG	2 cut(s)	64, 144
NlaIV	GGNNCC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	377, 402
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	30, 108
SatI	GCNGC	2 cut(s)	376, 401
Sau3AI	GATC	3 cut(s)	187, 254, 444
Sau96I	GGNCC	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	55, 222, 298, 327
SfcI	CTRYAG	1 cut(s)	376
SfuI	TTCGAA	1 cut(s)	22
SinI	GGWCC	1 cut(s)	424
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	3 cut(s)	27, 76, 315
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	140, 321
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	22, 151, 355
TasI	AATT	3 cut(s)	27, 76, 315
Tru1I	TTAA	2 cut(s)	30, 108
Tru9I	TTAA	2 cut(s)	30, 108
TscAI	CASTG	2 cut(s)	365, 385
TseI	GCWGC	2 cut(s)	375, 400
TspRI	CASTG	2 cut(s)	365, 385
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	424
VspI	ATTAAT	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.