Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

37983061 .. 37983602

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCACCGGTGGCAACATTTGGTGGCTTGCCGATACATGGAAGCACGACGATGTCGTCTTCTGGCACTGCTAGTGGCAGCAGGGTTAACGGGACCATGAGGGCTAGGGTTTCAATCCCATGCTCAACCCTCGTGTTCCGAACTCCATTACCAGGTCTGGTTGTCGAACCACCCTTGAGTGCTATGTTTCCAAAACAGAAAAGACAGGTGGTGGTGCGGAACTTGCAGGAGAAGGAGGAGGTCAATTCTGGCCAAATGAAGAGAAAGGGGGGTCGACCTATTGGCAACAAGAACAAGCTGCCTTCTGGTGAAAAACAAAAGGCCTCAAAGCATGGTGAGGGTAATGAGAAGAAAAAGTCTCCCAAGAAAAGCACTCTGGCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.65

Weight (kDa)

10.94

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	38, 152
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	250, 321
ApeKI	GCWGC	2 cut(s)	78, 298
AsiGI	ACCGGT	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	320, 347
AvaII	GGWCC	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	90, 285
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	2 cut(s)	72, 105
BisI	GCNGC	2 cut(s)	79, 299
BlsI	GCNGC	2 cut(s)	80, 300
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	6, 94
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 152
Bse118I	RCCGGY	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	38, 152
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	90, 285
BshFI	GGCC	2 cut(s)	252, 323
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	38, 152
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	252, 323
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	2 cut(s)	252, 323
BspLI	GGNNCC	2 cut(s)	6, 94
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 223
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	90, 285
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	252, 323
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	93
CsiI	ACCWGGT	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	4 cut(s)	38, 97, 120, 332
CviJI	RGCY	5 cut(s)	27, 104, 252, 298, 323
CviKI_1	RGCY	5 cut(s)	27, 104, 252, 298, 323
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	41, 100, 123, 335
FaiI	YATR	5 cut(s)	39, 98, 121, 185, 333
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	4 cut(s)	37, 96, 119, 331
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	79, 299
Fsp4HI	GCNGC	2 cut(s)	79, 299
FspBI	CTAG	2 cut(s)	72, 105
GluI	GCNGC	2 cut(s)	79, 299
HaeIII	GGCC	2 cut(s)	252, 323
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	4 cut(s)	41, 100, 123, 335
HincII	GTYRAC	2 cut(s)	88, 275
HindII	GTYRAC	2 cut(s)	88, 275
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	320, 347
Hpy166II	GTNNAC	2 cut(s)	88, 275
Hpy188I	TCNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	88, 275
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	226, 312
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 223
Hsp92II	CATG	4 cut(s)	41, 100, 123, 335
KspAI	GTTAAC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	90, 285
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	2 cut(s)	72, 105
MboII	GAAGA	3 cut(s)	51, 271, 361
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	244
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	6 cut(s)	93, 140, 229, 232, 331, 334
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	11, 223
NlaIII	CATG	4 cut(s)	41, 100, 123, 335
NlaIV	GGNNCC	2 cut(s)	6, 94
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	80, 300
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	6, 94
PspPI	GGNCC	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	79, 299
Sau96I	GGNCC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	5 cut(s)	157, 210, 243, 280, 300
SexAI	ACCWGGT	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	72, 105
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	151
TaqI	TCGA	2 cut(s)	165, 274
TasI	AATT	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	78, 298
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	2 cut(s)	72, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.