Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

34137421 .. 34140403

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCAGTCTGGCGAGACAGAAAGCTACGCGTAGCCAGGGCTTATGTGATTTTGCTTGCATTTGTCAAGGGAACTATAGGAGCTGCACTCCGACCTGCAGAACAACTGCTGCGTCTTGAGTATACACTTAATATATGGGATGTGGGGGTCGGTCAAAAAACAATACGATCTTATTGGAGAAACTATTTTGAGCAAATTGATGGTCTAGTATGGGTAGTTGACAGTTCAGATCTTAGAGGATTAGATGACTGCAAAATGGAGCTCGATAATCTTTTAAAGGAAGAGAGGCTATCAGCATCGTCCTTATTGATACTAGCAAATAAGCAGGACATAAAAGGTTCCCTTACTCTAGAAGAAATTTCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGACTGCTTGAGGGATTTGATTGTTGGTCCAAGACATTGCCTCTCAGATCTATGTGCTTGACTAATGCCTGGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

172

Amino Acids

19.65

Weight (kDa)

6.6

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	34 - 157	1.6e-38	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	35, 506
AluBI	AGCT	3 cut(s)	25, 83, 262
AluI	AGCT	3 cut(s)	25, 83, 262
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	3 cut(s)	83, 109, 417
ApoI	RAATTY	1 cut(s)	357
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	70, 96, 404
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	37, 508
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	206, 314, 350
BfmI	CTRYAG	3 cut(s)	75, 96, 418
BfuAI	ACCTGC	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	2 cut(s)	229, 485
BisI	GCNGC	3 cut(s)	84, 110, 418
BlsI	GCNGC	3 cut(s)	85, 111, 419
Bme1390I	CCNGG	2 cut(s)	37, 508
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	37, 508
BmsI	GCATC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpuEI	CTTGAG	2 cut(s)	137, 467
BsaJI	CCNNGG	2 cut(s)	36, 363
Bse1I	ACTGG	2 cut(s)	5, 407
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	37, 508
BseDI	CCNNGG	2 cut(s)	36, 363
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	496
BseNI	ACTGG	2 cut(s)	5, 407
BseXI	GCAGC	3 cut(s)	70, 96, 404
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	167, 229, 485
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	2 cut(s)	100, 422
BspMI	ACCTGC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	5, 407
BssECI	CCNNGG	2 cut(s)	36, 363
BssMI	GATC	3 cut(s)	167, 229, 485
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	363
Bst1107I	GTATAC	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	37, 508
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	233, 482, 513
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	170, 232, 488
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	167, 229, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	37, 508
BstSCI	CCNGG	2 cut(s)	35, 506
BstSFI	CTRYAG	3 cut(s)	75, 96, 418
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	70, 96, 404
BstX2I	RGATCY	2 cut(s)	229, 485
BstYI	RGATCY	2 cut(s)	229, 485
BstZ17I	GTATAC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	400, 427
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	101
CviJI	RGCY	8 cut(s)	25, 35, 41, 83, 262, 289, 383, 417
CviKI_1	RGCY	8 cut(s)	25, 35, 41, 83, 262, 289, 383, 417
DdeI	CTNAG	3 cut(s)	233, 482, 513
DpnI	GATC	3 cut(s)	169, 231, 487
DpnII	GATC	3 cut(s)	167, 229, 485
DraI	TTTAAA	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	35, 506
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	363
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	84, 110, 418
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	84, 110, 418
FspBI	CTAG	3 cut(s)	206, 314, 350
GluI	GCNGC	3 cut(s)	84, 110, 418
HgaI	GACGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	123, 220
Hpy188I	TCNGA	3 cut(s)	92, 229, 485
Hpy188III	TCNNGA	2 cut(s)	116, 350
Hpy8I	GTNNAC	2 cut(s)	123, 220
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	59, 86, 98, 252, 420, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	233, 482, 513
Kzo9I	GATC	3 cut(s)	167, 229, 485
LmnI	GCTCC	2 cut(s)	80, 259
LpnPI	CCDG	7 cut(s)	18, 22, 49, 108, 311, 388, 493
Lsp1109I	GCAGC	3 cut(s)	70, 96, 404
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	3 cut(s)	206, 314, 350
MalI	GATC	3 cut(s)	169, 231, 487
MboI	GATC	3 cut(s)	167, 229, 485
MboII	GAAGA	2 cut(s)	293, 365
MflI	RGATCY	2 cut(s)	229, 485
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	195, 357
MluI	ACGCGT	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	230, 279, 373, 430, 442, 489
MseI	TTAA	2 cut(s)	129, 275
MspR9I	CCNGG	2 cut(s)	37, 508
MvaI	CCWGG	2 cut(s)	37, 508
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	3 cut(s)	167, 229, 485
NlaIV	GGNNCC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	85, 111, 419
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	35, 506
PspGI	CCWGG	2 cut(s)	35, 506
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	465
PstI	CTGCAG	2 cut(s)	100, 422
PsuI	RGATCY	2 cut(s)	229, 485
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	129, 275
SatI	GCNGC	3 cut(s)	84, 110, 418
Sau3AI	GATC	3 cut(s)	167, 229, 485
Sau96I	GGNCC	1 cut(s)	465
ScrFI	CCNGG	2 cut(s)	37, 508
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	27, 85, 97, 264, 340, 369
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	3 cut(s)	75, 96, 418
SinI	GGWCC	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	116, 446
SmoI	CTYRAG	2 cut(s)	116, 446
Sse9I	AATT	2 cut(s)	195, 357
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	206, 314, 350
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	35, 506
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	264, 397
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	195, 357
Tru1I	TTAA	2 cut(s)	129, 275
Tru9I	TTAA	2 cut(s)	129, 275
TscAI	CASTG	2 cut(s)	407, 427
TseI	GCWGC	3 cut(s)	83, 109, 417
TspRI	CASTG	2 cut(s)	407, 427
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	1 cut(s)	357
XbaI	TCTAGA	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	3 cut(s)	206, 314, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.