Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

20967453 .. 20970841

Gene Structure 3389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30040.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTGTTTCTTTCTTACAATGCATTTTGGATAACACGTGGTTTGACGACAATGGCACCAGCCTAACAGTATCTGCAATGGGGCTTCTCACCACTATTCGACAGATTAAAAGGAAGGAGAAGCAAATACGTCTACTCATGGTTGGGCTTGACAATTCGGGCAAGACTACAATTGTGATGAGGGTTAATGGGGAGGACATCAGCCTTGTCACTCCCACCCTCGGCTTCAACATCAAGACCCTCACTTACCTCAAGTATACTCTGAATATATGGGATGTGGGGGGTCAGAAAACACTACGATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTTGTATGGGCGGTCGACAGTTCTGATCTCAGACGATTAGACGACTGCAAAATGGAGCTCCATAATCTTCTCAAGGAAGAGAGGCTATCAGGATCCTCCTTATTGATTCTAGCAAATAAGCAGGACATAAAAGGTGCCCTTACTCTAGAAGAAATTTCCAAGGTTTTGAACTTGGAGGCTATAGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACAGTTGGTTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

193

Amino Acids

21.76

Weight (kDa)

7.63

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	31 - 167	2.9e-53	ADP-ribosylation factor family
SRPRB	PF09439	41 - 160	1.1e-06	Signal recognition particle receptor beta subunit
Roc	PF08477	44 - 154	1.2e-10	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	44 - 157	1.2e-07	Ras family
G-alpha	PF00503	66 - 123	6.5e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 470
AccI	GTMKAC	3 cut(s)	133, 257, 351
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	423, 436
AcsI	RAATTY	1 cut(s)	489
AcvI	CACGTG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	229, 323, 505
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	423, 436
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	489
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AsuHPI	GGTGA	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	2 cut(s)	56, 470
BanII	GRGCYC	1 cut(s)	396
BbrPI	CACGTG	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	446, 482
BfmI	CTRYAG	2 cut(s)	516, 550
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	58, 430, 472
BpuEI	CTTGAG	2 cut(s)	236, 392
BsaAI	YACGTR	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	220, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	220, 495
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	536
Bsh1285I	CGRYCG	1 cut(s)	351
BshNI	GGYRCC	2 cut(s)	56, 470
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	396, 475
Bsp143I	GATC	3 cut(s)	299, 361, 428
BspACI	CCGC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	58, 430, 472
BspMAI	CTGCAG	1 cut(s)	554
BspPI	GGATC	2 cut(s)	423, 436
BspT107I	GGYRCC	2 cut(s)	56, 470
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	220, 495
BssMI	GATC	3 cut(s)	299, 361, 428
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	70, 356, 565
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	302, 364, 431
BstMBI	GATC	3 cut(s)	299, 361, 428
BstMCI	CGRYCG	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	516, 550
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	532, 559
CaiI	CAGNNNCTG	1 cut(s)	74
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	9 cut(s)	63, 85, 148, 204, 225, 394, 421, 515, 549
CviKI_1	RGCY	9 cut(s)	63, 85, 148, 204, 225, 394, 421, 515, 549
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	3 cut(s)	301, 363, 430
DpnII	GATC	3 cut(s)	299, 361, 428
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	142
FaiI	YATR	9 cut(s)	140, 258, 269, 271, 343, 399, 464, 518, 559
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FatI	CATG	1 cut(s)	138
FblI	GTMKAC	3 cut(s)	133, 257, 351
Fnu4HI	GCNGC	1 cut(s)	550
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	2 cut(s)	446, 482
GluI	GCNGC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	442
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	134, 258, 352
Hpy188I	TCNGA	4 cut(s)	264, 288, 361, 368
Hpy188III	TCNNGA	3 cut(s)	235, 426, 482
Hpy8I	GTNNAC	3 cut(s)	134, 258, 352
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	70, 356, 565
HpyCH4IV	ACGT	2 cut(s)	38, 130
HpyCH4V	TGCA	5 cut(s)	24, 77, 384, 552, 557
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	2 cut(s)	38, 130
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	299, 361, 428
LmnI	GCTCC	2 cut(s)	391, 399
LpnPI	CCDG	4 cut(s)	73, 411, 443, 520
Lsp1109I	GCAGC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	446, 482
MaeII	ACGT	2 cut(s)	38, 130
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	301, 363, 430
MboI	GATC	3 cut(s)	299, 361, 428
MboII	GAAGA	3 cut(s)	395, 425, 497
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	396, 475
MluCI	AATT	3 cut(s)	154, 171, 489
MnlI	CCTC	8 cut(s)	174, 187, 230, 251, 260, 411, 442, 505
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	2 cut(s)	108, 186
MunI	CAATTG	1 cut(s)	171
NdeII	GATC	3 cut(s)	299, 361, 428
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	3 cut(s)	58, 430, 472
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	39
PmlI	CACGTG	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	58, 430, 472
PstI	CTGCAG	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	108, 186
SatI	GCNGC	1 cut(s)	550
Sau3AI	GATC	3 cut(s)	299, 361, 428
SduI	GDGCHC	2 cut(s)	396, 475
SetI	ASST	6 cut(s)	41, 133, 252, 396, 472, 501
SfcI	CTRYAG	2 cut(s)	516, 550
SmlI	CTYRAG	2 cut(s)	251, 407
SmoI	CTYRAG	2 cut(s)	251, 407
Sse9I	AATT	3 cut(s)	154, 171, 489
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	446, 482
SstI	GAGCTC	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	70, 356, 565
TaiI	ACGT	2 cut(s)	41, 133
TaqI	TCGA	3 cut(s)	100, 351, 529
TasI	AATT	3 cut(s)	154, 171, 489
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	2 cut(s)	108, 186
Tru9I	TTAA	2 cut(s)	108, 186
TscAI	CASTG	2 cut(s)	539, 559
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	2 cut(s)	539, 559
XapI	RAATTY	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	481
XmiI	GTMKAC	3 cut(s)	133, 257, 351
XspI	CTAG	2 cut(s)	446, 482
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.