Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

22935076 .. 22936596

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCAGTTATTTCACAAAGACTTGCCATGCCCTTGCAAGACCAAGCGATCAGCCTTGCTACCCCAAGTCATAGGAGCACTGATACATAAAAATGAGAGCGAATTCCATATCGATAAGGCATACGGATCTAGGTTGCAAACCCCGATCGGTCTACGATCTAGCAGGGAGCTCGATAATCTTTTAAAGGAAGAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACTGGTGAGGGACTGATTGAGGGATTTGATTGGTTGGTCCAAGACATTGCCTCTCAGATCTATGTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

110

Amino Acids

12.38

Weight (kDa)

5.76

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	63 - 101	1.9e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	2 cut(s)	79, 171
AlwI	GGATC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	79, 171
BbvI	GCAGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BfaI	CTAG	2 cut(s)	129, 159
BfmI	CTRYAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	233, 262
Bse3DI	GCAATG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	233, 262
BseXI	GCAGC	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	79, 171
BslFI	GGGAC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	79, 171
Bsp143I	GATC	5 cut(s)	47, 125, 144, 155, 312
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	233, 262
BssMI	GATC	5 cut(s)	47, 125, 144, 155, 312
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	5 cut(s)	50, 128, 147, 158, 315
BstMBI	GATC	5 cut(s)	47, 125, 144, 155, 312
BstMCI	CGRYCG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	125, 312
BstYI	RGATCY	2 cut(s)	125, 312
Bsu15I	ATCGAT	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	4 cut(s)	77, 226, 253, 255
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	111
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	53, 169, 209, 243
CviKI_1	RGCY	4 cut(s)	53, 169, 209, 243
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	5 cut(s)	49, 127, 146, 157, 314
DpnII	GATC	5 cut(s)	47, 125, 144, 155, 312
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	30
FaiI	YATR	8 cut(s)	28, 71, 87, 108, 121, 212, 253, 318
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	129, 159
GluI	GCNGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	312
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	5 cut(s)	4, 36, 136, 246, 251
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	47, 125, 144, 155, 312
LmnI	GCTCC	2 cut(s)	74, 166
LpnPI	CCDG	3 cut(s)	148, 214, 243
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	129, 159
MalI	GATC	5 cut(s)	49, 127, 146, 157, 314
MboI	GATC	5 cut(s)	47, 125, 144, 155, 312
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	2 cut(s)	125, 312
MhlI	GDGCHC	2 cut(s)	79, 171
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	5 cut(s)	184, 199, 256, 268, 316
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	90
NdeII	GATC	5 cut(s)	47, 125, 144, 155, 312
NlaIII	CATG	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	245
Ple19I	CGATCG	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	125, 312
PvuI	CGATCG	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	5 cut(s)	47, 125, 144, 155, 312
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	79, 171
SetI	ASST	3 cut(s)	134, 171, 195
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	101
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	2 cut(s)	129, 159
SstI	GAGCTC	1 cut(s)	171
TaqI	TCGA	3 cut(s)	111, 171, 223
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	4 cut(s)	84, 233, 253, 262
TseI	GCWGC	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	4 cut(s)	84, 233, 253, 262
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	2 cut(s)	129, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.