Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001865.1

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

40004 .. 41289

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001865.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggtcgggcttgacaattcgggaaaaactacgattgtgctgaggattaatggggaggacaccagcgtcgtcagtcccaccctgggcttcaacatcaagaccctcacttaccagaagtatacacttaacatatgggatgtggggggtcaaaaaacaatacgatcttactggagaaactattttgaacaaactgatggtctcgtatgggtagttgacagttctgatcttagaagattagatgactgcaaaatggagcttgataatcttttgaaggaagagaggctgtcaggatcgtccttactgatactagcaaataagcaggacataaaaggtgcccttactccacaagaaattgccaaggttttgaacttggaggccatggataaaactcgacactggaatattgttggctgcagtgcatacacgggtgaggggctgcttcagggatttgattggttggtccaagacattgcctctcggatctatgtgcttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

5.05

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	298, 488
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	91, 185, 271, 367
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	298, 488
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	411, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AseI	ATTAAT	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	332
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	398, 423
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	2 cut(s)	412, 437
BlsI	GCNGC	2 cut(s)	413, 438
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	81, 82, 357, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	173, 401
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	4 cut(s)	81, 82, 357, 378
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	173, 401
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	398, 423
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	161, 223, 290, 480
Bsp19I	CCATGG	1 cut(s)	378
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	2 cut(s)	298, 488
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	173, 401
BssECI	CCNNGG	4 cut(s)	81, 82, 357, 378
BssMI	GATC	4 cut(s)	161, 223, 290, 480
BssNAI	GTATAC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	357, 378
Bst1107I	GTATAC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	41, 227
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	4 cut(s)	164, 226, 293, 483
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	4 cut(s)	161, 223, 290, 480
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	398, 423
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BstZ17I	GTATAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	394, 421
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	55
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	7 cut(s)	10, 87, 256, 283, 377, 411, 436
CviKI_1	RGCY	7 cut(s)	10, 87, 256, 283, 377, 411, 436
DdeI	CTNAG	2 cut(s)	41, 227
DpnI	GATC	4 cut(s)	163, 225, 292, 482
DpnII	GATC	4 cut(s)	161, 223, 290, 480
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	357, 378
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	357, 378
ErhI	CCWWGG	2 cut(s)	357, 378
FaeI	CATG	1 cut(s)	382
FaiI	YATR	8 cut(s)	120, 131, 133, 205, 326, 380, 421, 486
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	412, 437
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	412, 437
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	412, 437
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	377
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	120, 214
Hpy188I	TCNGA	2 cut(s)	223, 480
Hpy188III	TCNNGA	3 cut(s)	21, 97, 288
Hpy8I	GTNNAC	2 cut(s)	120, 214
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	246, 414, 419
HpyF3I	CTNAG	2 cut(s)	41, 227
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	161, 223, 290, 480
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	68, 76, 95, 125, 154, 273, 305, 382, 428
Lsp1109I	GCAGC	2 cut(s)	398, 423
MaeI	CTAG	1 cut(s)	308
MalI	GATC	4 cut(s)	163, 225, 292, 482
MboI	GATC	4 cut(s)	161, 223, 290, 480
MboII	GAAGA	2 cut(s)	243, 287
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	16, 351
MnlI	CCTC	7 cut(s)	36, 49, 113, 273, 367, 424, 484
MseI	TTAA	2 cut(s)	48, 126
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	378
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	4 cut(s)	161, 223, 290, 480
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	334
PasI	CCCWGGG	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	413, 438
PshBI	ATTAAT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	48, 126
SatI	GCNGC	2 cut(s)	412, 437
Sau3AI	GATC	4 cut(s)	161, 223, 290, 480
Sau96I	GGNCC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	3 cut(s)	258, 334, 363
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	460
Sse9I	AATT	2 cut(s)	16, 351
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	357, 378
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	391
TasI	AATT	2 cut(s)	16, 351
Tru1I	TTAA	2 cut(s)	48, 126
Tru9I	TTAA	2 cut(s)	48, 126
TscAI	CASTG	2 cut(s)	401, 421
TseI	GCWGC	2 cut(s)	411, 436
TspRI	CASTG	2 cut(s)	401, 421
VpaK11BI	GGWCC	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.