Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

37525957 .. 37527174

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGCTCGATAATCTTTTAAAGGAAGAGAGGCTATCAGCATCATCCTTATTGATACTAGCAAATAAGCAGGACATAAAAGGTTCCCTTACTCTAGAAGAAATTTCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGAGCATACACGGGTGAGGGACTGCTTGAGGGATTTGATTGGTTGGTCCAAGACGTTGCCTCTCAGATCTATGTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

82

Amino Acids

9.27

Weight (kDa)

4.61

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	2 - 73	8.8e-19	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	59, 95
BfmI	CTRYAG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	211
CviJI	RGCY	4 cut(s)	7, 34, 128, 162
CviKI_1	RGCY	4 cut(s)	7, 34, 128, 162
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	4 cut(s)	77, 131, 172, 237
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	59, 95
GluI	GCNGC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	56, 133
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	59, 95
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	2 cut(s)	38, 110
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	5 cut(s)	24, 118, 175, 187, 235
MseI	TTAA	1 cut(s)	20
NdeII	GATC	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	9, 85, 114, 222
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	102
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	59, 95
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	9, 142
TasI	AATT	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	162
TspRI	CASTG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	102
XbaI	TCTAGA	1 cut(s)	94
XspI	CTAG	2 cut(s)	59, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.