Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

12593441 .. 12599814

Gene Structure 6374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTCTGCACTTCGCTCCTCGCAGCTCATCGTGATCAAGAGTTTGTCTGTGATGGCAAAGACGACTCTTCCAGTGGTGAGGAAAACAAAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCGTGGAATGGTCAACACCCAGAAACTGTATTTCGCCTGGTCTTTTGGGGTTGACAATTCGGGCAAGACTAGGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

5.57

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	56 - 95	3.8e-07	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	26, 105
AluI	AGCT	2 cut(s)	26, 105
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	26, 105, 234, 255
CviKI_1	RGCY	4 cut(s)	26, 105, 234, 255
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	100
HincII	GTYRAC	2 cut(s)	142, 181
HindII	GTYRAC	2 cut(s)	142, 181
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	142, 181
Hpy188III	TCNNGA	3 cut(s)	32, 38, 211
Hpy8I	GTNNAC	2 cut(s)	142, 181
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	6 cut(s)	85, 110, 151, 161, 178, 244
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	5 cut(s)	29, 73, 108, 217, 281
MseI	TTAA	2 cut(s)	216, 289
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	216, 289
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	2 cut(s)	28, 107
SfaNI	GCATC	1 cut(s)	130
Sse9I	AATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	216, 289
Tru9I	TTAA	2 cut(s)	216, 289
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	216
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.