Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

10860668 .. 10862410

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGAAAGGTCGTGCACTTTCCGACGGAGTGATCAAAAAGATCATCCTTTCATACACCTATGTCGCAATCTGGATCTTCCTCAGCTTCACAGTCATCGTCTACAACAAATACATCCTCGACAAGAAGATGTATAATTGGCCATTCCCAATAACTCTCACCATGATCCACATGGGTTTTTGCTCTTCCTTAGCTGTGATTCTCATCAAAGTCTTCAAAGTCGTCGAGCCTGTTTCAATGTCACGCGAGACTTATCTCAGATCCGTCGTACCAATCGGCGCGTTGTACTCACTTTCTCTCTGGTTATCAAACTCTGCTTACATCTACCTCTCTGTTTCCTTCATTCAAATGCTCAAAGCCCTAATGCCTGTAGCAGTTTACTCAATCGGGGTTTTGTTGAAGAAAGAGACTTTCAAATCTCAGACTATGACTAACATGCTTTCGATCTCGTTTGGTGTTGCTATTGCTGCTTATGGTGAAGCTAAGTTTGATGGTTGGGGTGTTTTTCTTCAGCTTGGTGCTGTTGCTTTTGAAGCCACTAGGTTGGTTTTGATTCAGATCTTGCTTACTTCTAAAGGAATCAATCTAAATCCAATCACTTCTCTCTATTACGTTGCTCCTTGTTGTTTGGTTTTCCTCTCTGTTCCTTGGATCTTTGTGGAGTTTCCAGTTCTTAGAGATACTTCGAGTTTCCATTTCGATTTCGTGATCTTTGGAACCAATTCTGTTTGTGCGTTTGCTTTGAATCTTGCTGTGTTCTTGCTCGTTGGGAAAACCTCTGCTTTGACTATGAATGTGGCTGGTGTGGTTAAGGATTGGCTCTTGATTGCATTCTCGTGGTCGGTGATTAAGGACACGGTCACACCTATCAATCTGTTTGGTTATGGACTTGCCTTTTTGGGTGTTGGATATTACAATCACTGCAAGTTACAGGCGTTGAAGGCTAAAGATGCACAGAAGAAGGTTCAGGCAAGTGATGACGAAGCTGGGAAGCTTTTGGAAGAGAGGGAAAGTGAAGCTAAACGCAACGAAACCCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

347

Amino Acids

38.66

Weight (kDa)

9.08

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	1.5e-22	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	2 cut(s)	246, 281
AclWI	GGATC	4 cut(s)	83, 160, 255, 659
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	2 cut(s)	270, 287
AgsI	TTSAA	8 cut(s)	217, 237, 347, 400, 415, 533, 745, 940
AluBI	AGCT	7 cut(s)	87, 194, 482, 514, 986, 994, 1019
AluI	AGCT	7 cut(s)	87, 194, 482, 514, 986, 994, 1019
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	242, 401
Alw44I	GTGCAC	1 cut(s)	15
AlwI	GGATC	4 cut(s)	83, 160, 255, 659
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	721
AspLEI	GCGC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	151, 488, 856
BaeGI	GKGCMC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	142
BauI	CACGAG	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	485
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	242, 401
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	718
BmsI	GCATC	1 cut(s)	940
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	83, 190
BsaBI	GATNNNNATC	2 cut(s)	203, 557
BsaJI	CCNNGG	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	668
Bse8I	GATNNNNATC	2 cut(s)	203, 557
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	2 cut(s)	45, 114
BseJI	GATNNNNATC	2 cut(s)	203, 557
BseMII	CTCAG	3 cut(s)	97, 271, 434
BseNI	ACTGG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	454
BseYI	CCCAGC	1 cut(s)	986
Bsh1236I	CGCG	2 cut(s)	246, 281
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	242, 401
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	3 cut(s)	96, 270, 433
BspFNI	CGCG	2 cut(s)	246, 281
BspLI	GGNNCC	1 cut(s)	718
BspPI	GGATC	4 cut(s)	83, 160, 255, 659
BspQI	GCTCTTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
BssSI	CACGAG	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	835
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	2 cut(s)	190, 996
BstDEI	CTNAG	6 cut(s)	83, 190, 257, 420, 483, 674
BstF5I	GGATG	2 cut(s)	45, 114
BstFNI	CGCG	2 cut(s)	246, 281
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	9 cut(s)	36, 45, 78, 168, 263, 447, 561, 654, 711
BstMAI	GTCTC	2 cut(s)	242, 401
BstMBI	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
BstNSI	RCATGY	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	2 cut(s)	246, 281
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	4 cut(s)	75, 260, 558, 651
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	4 cut(s)	75, 260, 558, 651
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	45, 114
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	1 cut(s)	919
CfoI	GCGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	269, 286
CviAII	CATG	3 cut(s)	163, 172, 436
CviQI	GTAC	2 cut(s)	269, 286
DdeI	CTNAG	6 cut(s)	83, 190, 257, 420, 483, 674
DpnI	GATC	9 cut(s)	35, 44, 77, 167, 262, 446, 560, 653, 710
DpnII	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	2 cut(s)	190, 996
EarI	CTCTTC	2 cut(s)	190, 996
Eco130I	CCWWGG	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	3 cut(s)	166, 175, 439
FatI	CATG	3 cut(s)	162, 171, 435
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	32, 101
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	990
HaeIII	GGCC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	166, 175, 439
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	4 cut(s)	199, 553, 579, 745
HphI	GGTGA	3 cut(s)	151, 488, 856
Hpy166II	GTNNAC	3 cut(s)	17, 103, 379
Hpy188I	TCNGA	4 cut(s)	25, 260, 423, 558
Hpy188III	TCNNGA	3 cut(s)	73, 706, 823
Hpy8I	GTNNAC	3 cut(s)	17, 103, 379
Hpy99I	CGWCG	3 cut(s)	29, 227, 269
HpyAV	CCTTC	3 cut(s)	349, 934, 955
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	17, 830, 924, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
HpyF3I	CTNAG	6 cut(s)	83, 190, 257, 420, 483, 674
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	166, 175, 439
HspAI	GCGC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	9 cut(s)	58, 243, 286, 381, 681, 786, 917, 953, 972
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	940
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	240, 859, 927
MalI	GATC	9 cut(s)	35, 44, 77, 167, 262, 446, 560, 653, 710
MboI	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
MboII	GAAGA	8 cut(s)	70, 139, 177, 205, 412, 500, 970, 1013
MflI	RGATCY	4 cut(s)	75, 260, 558, 651
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	2 cut(s)	136, 721
MluNI	TGGCCA	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	48, 886
MnlI	CCTC	6 cut(s)	92, 128, 338, 647, 787, 999
Mox20I	TGGCCA	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	2 cut(s)	810, 849
MslI	CAYNNNNRTG	2 cut(s)	347, 835
Msp20I	TGGCCA	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	830
MvnI	CGCG	2 cut(s)	246, 281
MwoI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
NdeII	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
NlaIII	CATG	3 cut(s)	166, 175, 439
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	240, 859
NspI	RCATGY	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	721
PfeI	GAWTC	4 cut(s)	199, 553, 579, 745
PflFI	GACNNNGTC	1 cut(s)	857
PkrI	GCNGC	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	986
PspN4I	GGNNCC	1 cut(s)	718
PsuI	RGATCY	4 cut(s)	75, 260, 558, 651
PsyI	GACNNNGTC	1 cut(s)	857
RsaI	GTAC	2 cut(s)	270, 287
RsaNI	GTAC	2 cut(s)	269, 286
RseI	CAYNNNNRTG	2 cut(s)	347, 835
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	810, 849
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	9 cut(s)	33, 42, 75, 165, 260, 444, 558, 651, 708
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	940
SfcI	CTRYAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	347, 835
Sse9I	AATT	2 cut(s)	136, 721
SspMI	CTAG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	5 cut(s)	120, 225, 443, 686, 699
TasI	AATT	2 cut(s)	136, 721
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	4 cut(s)	199, 553, 579, 745
Tru1I	TTAA	2 cut(s)	810, 849
Tru9I	TTAA	2 cut(s)	810, 849
TscAI	CASTG	1 cut(s)	926
TseFI	GTSAC	2 cut(s)	240, 859
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	240, 859
TspDTI	ATGAA	3 cut(s)	42, 331, 806
TspGWI	ACGGA	2 cut(s)	42, 253
TspRI	CASTG	1 cut(s)	926
Tth111I	GACNNNGTC	1 cut(s)	857
VneI	GTGCAC	1 cut(s)	15
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	721
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.