Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

15636415 .. 15638040

Gene Structure 1626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAAAAGGCGGTGCACTTAGCGATGGAGTCATCAAGAAGATCCTCCTCTCCTACACCTACGTCGCGATCTGGATCTTCCTGAGCTTCACCGTCATCGTCTACAACAAATACATCCTCGACAAGAAGATGTACAATTGGCCTTTTCCGATCACACTCACCATGATCCACATGGCTTTTTGCTCTTCCCTCGCCGTCATCCTCATCAAAGTCTTCAAAATCGTCGAGCCTGTTTCAATGTCTCGAGATACTTACATCAGATCTGTAGTCCCGATCGGTGCTCTGTACTCGCTTTCTCTCTGGCTCTCCAATTCCGCTTACATTTACCTCTCCGTCTCCTTCATTCAGATGCTCAAAGCTCTAATGCCTGTCGCTGTTTACTCAATCGGAGTCCTTCTTAAGAAAGAATCGTTCAAATCGGAGACGATGACTAATATGCTCTCGATCTCTTTCGGTGTTGCGATTGCTGCTTATGGTGAGGCTAAGTTCGATACTTGGGGAGTTATGCTTCAGCTTGGTGCTGTAGCTTTCGAAGCAACGAGGTTGGTTTTGATTCAGATCTTGCTCACTTCTAAAGGAATCAATCTTAATCCAATCACTTCATTGTACTACGTTGCTCCTTGTTGTTTGGTGTTCCTCTTCTTCCCTTGGATCTTCGTCGAGCTTCCGATTCTTAGGGAAACTTCGAGTTTCCACTTTGATTTCGTGATTTTTGGGACTAATTCCGTATGTGCATTTGCTTTGAACCTTGCTGTGTTCCTCCTCGTTGGAAAGACCTCGGCTTTAACAATGAATGTTGCTGGTGTGGTTAAGGATTGGCTATTGATTGCCTTCTCTTGGTCTGTGATTAAAGATACGGTGACTCCGCTTAATCTCTTTGGTTACGGGCTTGCGTTCTTGGGTGTTGCGTATTACAATCACTGCAAGTTACAGGCGTTGAAGGCTAAGGATGCTCAGAAGAAGGTTCAGCAAGGTGATGAAGAAGAAGCTGGGAAGCTTTTGGAAGAGAGGGAAAGTGAAGCTGCTGCGAAACGGAATGAAACAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

39.02

Weight (kDa)

8.61

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	5.2e-24	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	12, 315, 866
AclWI	GGATC	4 cut(s)	37, 83, 160, 659
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	134, 287, 608
AfiI	CCNNNNNNNGG	1 cut(s)	837
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	217, 237, 415, 745, 940
AluBI	AGCT	8 cut(s)	87, 359, 514, 527, 664, 989, 997, 1022
AluI	AGCT	8 cut(s)	87, 359, 514, 527, 664, 989, 997, 1022
Alw21I	GWGCWC	2 cut(s)	19, 283
Alw26I	GTCTC	3 cut(s)	246, 340, 416
Alw44I	GTGCAC	1 cut(s)	15
AlwI	GGATC	4 cut(s)	37, 83, 160, 659
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	3 cut(s)	467, 1022, 1025
AsuHPI	GGTGA	5 cut(s)	82, 151, 488, 871, 986
AsuII	TTCGAA	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	19, 283
BbvI	GCAGC	3 cut(s)	454, 1009, 1012
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	246, 340, 416
BfmI	CTRYAG	2 cut(s)	264, 522
BfrI	CTTAAG	1 cut(s)	398
BglII	AGATCT	2 cut(s)	260, 558
BisI	GCNGC	3 cut(s)	468, 1023, 1026
BlsI	GCNGC	3 cut(s)	469, 1024, 1027
BmeT110I	CYCGRG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	339, 940
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	83, 945
Bpu14I	TTCGAA	1 cut(s)	531
BsaBI	GATNNNNATC	2 cut(s)	74, 557
BsaJI	CCNNGG	2 cut(s)	647, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse8I	GATNNNNATC	2 cut(s)	74, 557
BseDI	CCNNGG	2 cut(s)	647, 777
BseGI	GGATG	3 cut(s)	114, 198, 955
BseJI	GATNNNNATC	2 cut(s)	74, 557
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	74, 968
BseRI	GAGGAG	2 cut(s)	38, 752
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	454, 1009, 1012
BseYI	CCCAGC	1 cut(s)	989
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	19, 283
BsiHKCI	CYCGRG	1 cut(s)	243
BslFI	GGGAC	2 cut(s)	254, 730
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	3 cut(s)	246, 340, 416
BsmBI	CGTCTC	2 cut(s)	340, 416
BsmFI	GGGAC	2 cut(s)	254, 730
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	2 cut(s)	19, 283
Bsp1407I	TGTACA	1 cut(s)	132
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	3 cut(s)	12, 315, 866
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	75, 967
BspFNI	CGCG	1 cut(s)	68
BspPI	GGATC	4 cut(s)	37, 83, 160, 659
BspQI	GCTCTTC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	647, 777
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	3 cut(s)	190, 644, 999
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	6 cut(s)	20, 83, 483, 674, 945, 954
BstF5I	GGATG	3 cut(s)	114, 198, 955
BstFNI	CGCG	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	246, 340, 416
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
BstSFI	CTRYAG	2 cut(s)	264, 522
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	454, 1009, 1012
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	5 cut(s)	42, 75, 260, 558, 651
BstYI	RGATCY	5 cut(s)	42, 75, 260, 558, 651
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	114, 198, 955
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	1 cut(s)	919
BtuMI	TCGCGA	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	891
Csp6I	GTAC	3 cut(s)	133, 286, 607
CviAII	CATG	2 cut(s)	163, 172
CviQI	GTAC	3 cut(s)	133, 286, 607
DdeI	CTNAG	6 cut(s)	20, 83, 483, 674, 945, 954
Eam1104I	CTCTTC	3 cut(s)	190, 644, 999
EarI	CTCTTC	3 cut(s)	190, 644, 999
Eco130I	CCWWGG	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	2 cut(s)	340, 416
FaeI	CATG	2 cut(s)	166, 175
FaiI	YATR	6 cut(s)	164, 173, 437, 474, 506, 730
FaqI	GGGAC	2 cut(s)	254, 730
FatI	CATG	2 cut(s)	162, 171
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	468, 1023, 1026
FokI	GGATG	3 cut(s)	101, 185, 962
Fsp4HI	GCNGC	3 cut(s)	468, 1023, 1026
GluI	GCNGC	3 cut(s)	468, 1023, 1026
GsaI	CCCAGC	1 cut(s)	993
HaeIII	GGCC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	166, 175
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	7 cut(s)	30, 390, 407, 553, 579, 670, 862
HphI	GGTGA	5 cut(s)	82, 151, 488, 871, 986
Hpy166II	GTNNAC	3 cut(s)	17, 103, 379
Hpy188I	TCNGA	8 cut(s)	150, 260, 348, 389, 421, 558, 669, 957
Hpy188III	TCNNGA	9 cut(s)	37, 67, 73, 82, 243, 245, 271, 442, 706
Hpy8I	GTNNAC	3 cut(s)	17, 103, 379
Hpy99I	CGWCG	3 cut(s)	68, 227, 662
HpyAV	CCTTC	5 cut(s)	349, 404, 841, 934, 955
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	2 cut(s)	63, 612
HpyCH4V	TGCA	3 cut(s)	17, 734, 924
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
HpyF3I	CTNAG	6 cut(s)	20, 83, 483, 674, 945, 954
HpySE526I	ACGT	2 cut(s)	63, 612
Hsp92II	CATG	2 cut(s)	166, 175
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	8 cut(s)	58, 95, 243, 286, 381, 786, 917, 975
Lsp1109I	GCAGC	3 cut(s)	454, 1009, 1012
LweI	GCATC	2 cut(s)	339, 940
MaeII	ACGT	2 cut(s)	63, 612
MaeIII	GTNAC	3 cut(s)	859, 881, 927
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	5 cut(s)	42, 75, 260, 558, 651
MhlI	GDGCHC	2 cut(s)	19, 283
MluCI	AATT	3 cut(s)	136, 310, 721
MlyI	GAGTC	3 cut(s)	39, 399, 856
MmeI	TCCRAC	1 cut(s)	748
MseI	TTAA	6 cut(s)	399, 588, 785, 810, 849, 870
MslI	CAYNNNNRTG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
NlaIII	CATG	2 cut(s)	166, 175
NmeAIII	GCCGAG	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	859
NruI	TCGCGA	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	531
PaeR7I	CTCGAG	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	407, 553, 579, 670
PkrI	GCNGC	3 cut(s)	469, 1024, 1027
Ple19I	CGATCG	1 cut(s)	276
PleI	GAGTC	3 cut(s)	38, 398, 856
PpsI	GAGTC	3 cut(s)	38, 398, 856
PspFI	CCCAGC	1 cut(s)	989
PsuI	RGATCY	5 cut(s)	42, 75, 260, 558, 651
PvuI	CGATCG	1 cut(s)	276
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	3 cut(s)	134, 287, 608
RsaNI	GTAC	3 cut(s)	133, 286, 607
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	6 cut(s)	399, 588, 785, 810, 849, 870
SatI	GCNGC	3 cut(s)	468, 1023, 1026
SchI	GAGTC	3 cut(s)	39, 399, 856
SduI	GDGCHC	2 cut(s)	19, 283
SfaNI	GCATC	2 cut(s)	339, 940
SfcI	CTRYAG	2 cut(s)	264, 522
Sfr274I	CTCGAG	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	531
SlaI	CTCGAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	243, 398
SmoI	CTYRAG	2 cut(s)	243, 398
Sse9I	AATT	3 cut(s)	136, 310, 721
SsiI	CCGC	3 cut(s)	12, 315, 866
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	2 cut(s)	66, 615
TaqI	TCGA	8 cut(s)	120, 225, 244, 443, 489, 531, 660, 686
TasI	AATT	3 cut(s)	136, 310, 721
TatI	WGTACW	3 cut(s)	132, 285, 606
TfiI	GAWTC	4 cut(s)	407, 553, 579, 670
Tru1I	TTAA	6 cut(s)	399, 588, 785, 810, 849, 870
Tru9I	TTAA	6 cut(s)	399, 588, 785, 810, 849, 870
TscAI	CASTG	1 cut(s)	926
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	3 cut(s)	467, 1022, 1025
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	5 cut(s)	331, 591, 806, 993, 1053
TspGWI	ACGGA	3 cut(s)	322, 715, 1048
TspRI	CASTG	1 cut(s)	926
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.