Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

64713553 .. 64714205

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGCGGGACCTGGAGGTCGCCATCGTGAAGGCCACCAGCCACGAGGACGAGCTGGCTGGCGAGAAGTACATCCGGGAGATCCTCCAGCTGACGTCATACTCCCAGGGATACGTCCACACGTGCGTGTCGACGGTGTCGAAGCGATTAGGGAAGACGCGCGACTGGATCGTGGCTCTCAAAGCGTTGATGCTGGTGCACCGCCTCGTGAACGACGGGATCACCTTGAATCCCATTACCTCTTTGTACTATGTGGCTCCTTGTTGCTTGGCTTTTCTGTTGGTGCCTTGGATCTATGTGGAGTACCCAACACTGAGGGACACCTCGAGTTTCCATTTCGATTACGTGATTTTCGGGACCAATTCCTTCTATGCGTTCGCTTTGAATCTTGCAGTGTTCTTGCTTGTGGGGAAGACCTCGGCTTTGACGATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCAATCAATCTGGTGGGTTATGGAAAAACACTCGAAATTGCAGTGATCAAATATCTAACAAGCTATCGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

192

Amino Acids

21.67

Weight (kDa)

8.69

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	4 - 73	2.1e-19	ANTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	2 cut(s)	160, 162
AciI	CCGC	3 cut(s)	7, 202, 440
AclWI	GGATC	4 cut(s)	76, 176, 227, 299
AcvI	CACGTG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	71, 248, 305
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	229, 385
AjnI	CCWGG	2 cut(s)	12, 105
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	55, 91, 567
AluI	AGCT	3 cut(s)	55, 91, 567
Alw21I	GWGCWC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	76, 176, 227, 299
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	10, 357
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	214, 460
AvaI	CYCGRG	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	10, 357
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	2 cut(s)	44, 206
BbrPI	CACGTG	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	161, 419
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	14, 107
BciVI	GTATCC	1 cut(s)	104
BclI	TGATCA	2 cut(s)	486, 549
BcnI	CCSGG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	14, 77, 107
Bme18I	GGWCC	2 cut(s)	10, 357
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	10, 357
BmiI	GGNNCC	4 cut(s)	11, 258, 285, 358
BmrFI	CCNGG	3 cut(s)	14, 77, 107
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	161, 419
BpmI	CTGGAG	2 cut(s)	35, 71
BpuMI	CCSGG	1 cut(s)	77
BsaAI	YACGTR	2 cut(s)	123, 346
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	105, 106, 287, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	14, 107
BseDI	CCNNGG	4 cut(s)	105, 106, 287, 417
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	201
Bsh1236I	CGCG	2 cut(s)	160, 162
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	3 cut(s)	23, 332, 370
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmFI	GGGAC	3 cut(s)	23, 332, 370
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
BspACI	CCGC	3 cut(s)	7, 202, 440
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	160, 162
BspLI	GGNNCC	4 cut(s)	11, 258, 285, 358
BspPI	GGATC	4 cut(s)	76, 176, 227, 299
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	105, 106, 287, 417
BssMI	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	2 cut(s)	44, 206
BssT1I	CCWWGG	1 cut(s)	287
Bst2BI	CACGAG	2 cut(s)	44, 206
Bst2UI	CCWGG	2 cut(s)	14, 107
Bst4CI	ACNGT	2 cut(s)	136, 499
BstACI	GRCGYC	1 cut(s)	95
BstBAI	YACGTR	2 cut(s)	123, 346
BstC8I	GCNNGC	2 cut(s)	57, 61
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	160, 162
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	84, 171, 222, 294, 489, 552
BstMBI	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	2 cut(s)	14, 107
BstSCI	CCNGG	3 cut(s)	12, 75, 105
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	2 cut(s)	160, 162
BstV2I	GAAGAC	2 cut(s)	161, 419
BstX2I	RGATCY	2 cut(s)	81, 291
BstYI	RGATCY	2 cut(s)	81, 291
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	2 cut(s)	399, 552
BtsIMutI	CAGTG	4 cut(s)	311, 399, 495, 552
Cac8I	GCNNGC	2 cut(s)	57, 61
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	10, 357
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	70, 247, 304
CviQI	GTAC	3 cut(s)	70, 247, 304
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	6 cut(s)	83, 170, 221, 293, 488, 551
DpnII	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	10, 357
Eco72I	CACGTG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	12, 105
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaiI	YATR	5 cut(s)	100, 252, 297, 372, 525
FaqI	GGGAC	3 cut(s)	23, 332, 370
FauI	CCCGC	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	486, 549
FblI	GTMKAC	1 cut(s)	131
FokI	GGATG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	161
GsuI	CTGGAG	2 cut(s)	35, 71
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	229, 385
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	2 cut(s)	214, 460
Hpy166II	GTNNAC	4 cut(s)	118, 132, 199, 211
Hpy188III	TCNNGA	4 cut(s)	28, 208, 355, 463
Hpy8I	GTNNAC	4 cut(s)	118, 132, 199, 211
Hpy99I	CGWCG	2 cut(s)	136, 218
HpyAV	CCTTC	3 cut(s)	25, 376, 481
HpyCH4III	ACNGT	2 cut(s)	136, 499
HpyCH4IV	ACGT	4 cut(s)	95, 114, 122, 345
HpyCH4V	TGCA	3 cut(s)	199, 392, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	4 cut(s)	95, 114, 122, 345
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	2 cut(s)	486, 549
Kzo9I	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	4 cut(s)	95, 114, 122, 345
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	6 cut(s)	83, 170, 221, 293, 488, 551
MboI	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
MboII	GAAGA	2 cut(s)	166, 424
MflI	RGATCY	2 cut(s)	81, 291
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	361, 540
MnlI	CCTC	8 cut(s)	10, 40, 95, 215, 250, 309, 334, 427
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	3 cut(s)	14, 77, 107
MvaI	CCWGG	2 cut(s)	14, 107
MvnI	CGCG	2 cut(s)	160, 162
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
NlaIV	GGNNCC	4 cut(s)	11, 258, 285, 358
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	499
OliI	CACNNNNGTG	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	3 cut(s)	128, 137, 425
PfeI	GAWTC	2 cut(s)	229, 385
PflFI	GACNNNGTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
Ppu21I	YACGTR	2 cut(s)	123, 346
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	12, 105
PspCI	CACGTG	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	12, 105
PspN4I	GGNNCC	4 cut(s)	11, 258, 285, 358
PspPI	GGNCC	2 cut(s)	10, 357
PspPPI	RGGWCCY	1 cut(s)	10
PspXI	VCTCGAGB	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	81, 291
PsyI	GACNNNGTC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	71, 248, 305
RsaNI	GTAC	3 cut(s)	70, 247, 304
RseI	CAYNNNNRTG	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	130
Sau3AI	GATC	6 cut(s)	81, 168, 219, 291, 486, 549
Sau96I	GGNCC	2 cut(s)	10, 357
ScrFI	CCNGG	3 cut(s)	14, 77, 107
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	325
SinI	GGWCC	2 cut(s)	10, 357
SlaI	CTCGAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	361, 540
SsiI	CCGC	3 cut(s)	7, 202, 440
StyD4I	CCNGG	3 cut(s)	12, 75, 105
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	136, 499
TaiI	ACGT	4 cut(s)	98, 117, 125, 348
TaqI	TCGA	5 cut(s)	131, 140, 326, 339, 537
TasI	AATT	2 cut(s)	361, 540
TatI	WGTACW	2 cut(s)	69, 246
TfiI	GAWTC	2 cut(s)	229, 385
TscAI	CASTG	4 cut(s)	318, 399, 502, 552
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	446
TspRI	CASTG	4 cut(s)	318, 399, 502, 552
Tth111I	GACNNNGTC	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	10, 357
XhoI	CTCGAG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	131
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.