Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00456

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

11059 .. 11847

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCTCAAGGCTCGGATGCCTGTGGCCGTCTACTCCACTGGGGTGTCGTTTAAGAAGGAGACGTTTAAGACTGACACGATGGTCAACATGCTCTCGATCTCCGTCGGCGTGGCCATTGCTGCTTATGGGGAGGCCAGATTCGACACCTGTAGTGTGATTCTGCAACTGGGTGCGGTCGTTTTCGAGGCCACGAGGCTTGTGTTGATCCAAATCTTGTTGACATCTAAAGGGATCCCATTACCTCTTTGTACTATGTGGCTCCTTGTTGCTTGGCTTTTCTGTTGGTTCCTTGGATCTATGTGGAGTACCCATTTCGATTACGTGATTTTCGGGACCAATTCCTCCTGTGCTTTCGCTTTGAATCTTGCTGTGTTTTTGCTTGTGGGGAAGACCTCGGCTTTGACGATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTCTCTTGGTCTGTCATCAAGGACACTGTGACCCCAATCAATCTGGTGGGTTATGGCCTTGCGTTTTTGGGGGTTGCGTATTACAATCACTCGAAATTGCAGGCTCTGAAGGCCAAGGAGGCGCAGAAGAAGGTGCCTCCGGCGGATGAGGAGGCGAATAATAGGCTGTTGGAGACTGAAGGTGAAGGACGGGAAGGCAAGAACAAATTTGAACTAGATTATGATAGTAAGAACATTGTTGGGTTAGAGGTGGAAGAGCATAAAATGGGTTCGAATTGGGAGGCCAAAGGAACTTGCCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

249

Amino Acids

27.47

Weight (kDa)

6.83

Isoelectric Point (pI)

23.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	2 - 178	3.3e-07	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	3 cut(s)	173, 416, 590
AclWI	GGATC	4 cut(s)	199, 226, 239, 301
AcoI	YGGCCR	2 cut(s)	24, 111
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	575, 645
AfaI	GTAC	2 cut(s)	250, 307
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	361, 659
AleI	CACNNNNGTG	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	53, 614
AlwI	GGATC	4 cut(s)	199, 226, 239, 301
AlwNI	CAGNNNCTG	1 cut(s)	553
AoxI	GGCC	7 cut(s)	24, 111, 132, 186, 502, 558, 729
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	436, 641
AsuII	TTCGAA	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	53, 614
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	5 cut(s)	233, 260, 287, 334, 582
BmrI	ACTGGG	2 cut(s)	48, 176
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	2 cut(s)	48, 176
BpiI	GAAGAC	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	289, 393, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	43, 171
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	289, 393, 561
BseGI	GGATG	2 cut(s)	21, 598
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	43, 171
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	7 cut(s)	26, 113, 134, 188, 504, 560, 731
BshNI	GGYRCC	1 cut(s)	580
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	53, 614
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	7 cut(s)	26, 113, 134, 188, 504, 560, 731
Bsp119I	TTCGAA	1 cut(s)	719
Bsp143I	GATC	4 cut(s)	96, 204, 231, 293
BspACI	CCGC	3 cut(s)	173, 416, 590
BspANI	GGCC	7 cut(s)	26, 113, 134, 188, 504, 560, 731
BspLI	GGNNCC	5 cut(s)	233, 260, 287, 334, 582
BspPI	GGATC	4 cut(s)	199, 226, 239, 301
BspQI	GCTCTTC	1 cut(s)	696
BspT104I	TTCGAA	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	43, 171
BssECI	CCNNGG	3 cut(s)	289, 393, 561
BssMI	GATC	4 cut(s)	96, 204, 231, 293
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	289, 561
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	21, 598
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	4 cut(s)	99, 207, 234, 296
BstMAI	GTCTC	2 cut(s)	53, 614
BstMBI	GATC	4 cut(s)	96, 204, 231, 293
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 557, 566
BstNSI	RCATGY	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	2 cut(s)	231, 293
BstYI	RGATCY	2 cut(s)	231, 293
BsuRI	GGCC	7 cut(s)	26, 113, 134, 188, 504, 560, 731
BtsCI	GGATG	2 cut(s)	21, 598
BtsIMutI	CAGTG	2 cut(s)	36, 471
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	249, 306
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	2 cut(s)	249, 306
DpnI	GATC	4 cut(s)	98, 206, 233, 295
DpnII	GATC	4 cut(s)	96, 204, 231, 293
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	2 cut(s)	24, 111
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	289, 561
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	575, 645
EcoT14I	CCWWGG	2 cut(s)	289, 561
ErhI	CCWWGG	2 cut(s)	289, 561
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	89, 126, 254, 299, 501, 669, 708
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	28, 605
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	7 cut(s)	26, 113, 134, 188, 504, 560, 731
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	2 cut(s)	85, 219
HindII	GTYRAC	2 cut(s)	85, 219
HinfI	GANTC	3 cut(s)	138, 157, 361
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	2 cut(s)	436, 641
Hpy166II	GTNNAC	3 cut(s)	31, 85, 219
Hpy188I	TCNGA	2 cut(s)	15, 555
Hpy188III	TCNNGA	3 cut(s)	94, 331, 439
Hpy8I	GTNNAC	3 cut(s)	31, 85, 219
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	7 cut(s)	49, 457, 550, 571, 620, 626, 635
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	2 cut(s)	62, 321
HpyCH4V	TGCA	2 cut(s)	163, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 557, 566
HpySE526I	ACGT	2 cut(s)	62, 321
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	569
Kzo9I	GATC	4 cut(s)	96, 204, 231, 293
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	9 cut(s)	24, 33, 148, 152, 160, 358, 476, 533, 600
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	2 cut(s)	62, 321
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	98, 206, 233, 295
MboI	GATC	4 cut(s)	96, 204, 231, 293
MboII	GAAGA	3 cut(s)	400, 586, 713
MflI	RGATCY	2 cut(s)	231, 293
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	337, 542, 653, 721
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	597
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	2 cut(s)	51, 66
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	119, 557, 566
NdeII	GATC	4 cut(s)	96, 204, 231, 293
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	5 cut(s)	233, 260, 287, 334, 582
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	719
OliI	CACNNNNGTG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	138, 157, 361
PkrI	GCNGC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	322
PspN4I	GGNNCC	5 cut(s)	233, 260, 287, 334, 582
PspPI	GGNCC	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	2 cut(s)	231, 293
RsaI	GTAC	2 cut(s)	250, 307
RsaNI	GTAC	2 cut(s)	249, 306
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	51, 66
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	96, 204, 231, 293
Sau96I	GGNCC	1 cut(s)	333
SetI	ASST	8 cut(s)	65, 149, 244, 324, 395, 582, 631, 699
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	719
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	4 cut(s)	337, 542, 653, 721
SsiI	CCGC	3 cut(s)	173, 416, 590
SspMI	CTAG	1 cut(s)	662
StyI	CCWWGG	2 cut(s)	289, 561
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	2 cut(s)	65, 324
TaqI	TCGA	6 cut(s)	95, 141, 183, 315, 539, 719
TasI	AATT	4 cut(s)	337, 542, 653, 721
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	138, 157, 361
Tru1I	TTAA	2 cut(s)	51, 66
Tru9I	TTAA	2 cut(s)	51, 66
TscAI	CASTG	2 cut(s)	43, 478
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	43, 478
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.