Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

5924052 .. 5924411

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCATGTCGGCGGTGTCAAAGCTGCCGGGGAAGACCCGCTACTAGATCGTGGCGCTCAATCTTGCTGTGTTCTTGCTTGTGGGGAAGACCCCGGCTTTGAAGATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTATCTTGGTCCGTGATCAAGGACACCGTGACCCCAATCAATCGGTGGGTTATGGCCTTGCATTTTTGGGGGTTGCGTATTATAATCACTCGAAATTCCGGGCTGCGAAGGCCAAGGAGGCGCAGAAGAAGGTGCTTCCGGCGGATGAGGAGGCGAATAATAGGTTGTTGGAGGTGAAGGTGAAGGACGAGAAGGAAAGTGGATCCCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

119

Amino Acids

12.81

Weight (kDa)

5.37

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AciI	CCGC	4 cut(s)	12, 38, 114, 287
AclWI	GGATC	2 cut(s)	342, 355
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	2 cut(s)	342, 355
AoxI	GGCC	2 cut(s)	199, 255
ApeKI	GCWGC	2 cut(s)	23, 248
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	2 cut(s)	56, 268
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	3 cut(s)	28, 93, 245
AsuHPI	GGTGA	3 cut(s)	134, 331, 337
AvaII	GGWCC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	2 cut(s)	39, 93
BbvI	GCAGC	2 cut(s)	10, 235
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	3 cut(s)	28, 93, 245
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	24, 249
BlsI	GCNGC	2 cut(s)	25, 250
Bme1390I	CCNGG	3 cut(s)	28, 93, 245
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	3 cut(s)	28, 93, 245
BpiI	GAAGAC	2 cut(s)	39, 93
BpuMI	CCSGG	3 cut(s)	28, 93, 245
BsaJI	CCNNGG	3 cut(s)	27, 91, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	27, 91, 258
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	10, 235
BshFI	GGCC	2 cut(s)	201, 257
BsiSI	CCGG	4 cut(s)	27, 93, 244, 284
BslI	CCNNNNNNNGG	1 cut(s)	151
BsnI	GGCC	2 cut(s)	201, 257
Bsp143I	GATC	3 cut(s)	46, 160, 347
BspACI	CCGC	4 cut(s)	12, 38, 114, 287
BspANI	GGCC	2 cut(s)	201, 257
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	342, 355
BssECI	CCNNGG	3 cut(s)	27, 91, 258
BssMI	GATC	3 cut(s)	46, 160, 347
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 268
BstKTI	GATC	3 cut(s)	49, 163, 350
BstMBI	GATC	3 cut(s)	46, 160, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	26, 91, 243
BstV1I	GCAGC	2 cut(s)	10, 235
BstV2I	GAAGAC	2 cut(s)	39, 93
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	201, 257
BtsCI	GGATG	1 cut(s)	295
CfoI	GCGC	2 cut(s)	56, 268
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	6 cut(s)	23, 96, 134, 201, 248, 257
CviKI_1	RGCY	6 cut(s)	23, 96, 134, 201, 248, 257
DpnI	GATC	3 cut(s)	48, 162, 349
DpnII	GATC	3 cut(s)	46, 160, 347
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	8
FaiI	YATR	3 cut(s)	6, 198, 228
FatI	CATG	1 cut(s)	4
FauI	CCCGC	2 cut(s)	45, 107
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	24, 249
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	24, 249
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	55, 267
GluI	GCNGC	2 cut(s)	24, 249
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	201, 257
HapII	CCGG	4 cut(s)	27, 93, 244, 284
HhaI	GCGC	2 cut(s)	56, 268
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	2 cut(s)	54, 266
HinP1I	GCGC	2 cut(s)	54, 266
HpaII	CCGG	4 cut(s)	27, 93, 244, 284
HphI	GGTGA	3 cut(s)	134, 331, 337
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	247, 268, 316, 322, 331
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	4, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	2 cut(s)	54, 266
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	46, 160, 347
LpnPI	CCDG	4 cut(s)	40, 106, 257, 297
Lsp1109I	GCAGC	2 cut(s)	10, 235
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	48, 162, 349
MboI	GATC	3 cut(s)	46, 160, 347
MboII	GAAGA	4 cut(s)	44, 98, 113, 283
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	2 cut(s)	239, 355
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	256, 286, 289, 310
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	4 cut(s)	27, 93, 244, 284
MspR9I	CCNGG	3 cut(s)	28, 93, 245
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NciI	CCSGG	3 cut(s)	28, 93, 245
NdeII	GATC	3 cut(s)	46, 160, 347
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	25, 250
PsiI	TTATAA	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	347
SatI	GCNGC	2 cut(s)	24, 249
Sau3AI	GATC	3 cut(s)	46, 160, 347
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	28, 93, 245
SetI	ASST	5 cut(s)	25, 279, 311, 321, 327
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	2 cut(s)	239, 355
SsiI	CCGC	4 cut(s)	12, 38, 114, 287
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	26, 91, 243
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	239, 355
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	23, 248
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.