pycom02g02730

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001025
Physical Location & Seq
Forward (+)
1733188 .. 1734225
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02730.1

Sequence Viewer

Length: 1038 bp
ATGGCGCTTTCAGAGGGGGTGGTGAAGAAGGTCCTCCTCTCCTACGCCTACGTCGGAATTTGGATCGTCCTCTCCTTCACCGTCATCGTCTACAACAAGTACATCCTCGACCGGAAAATGTACAACTGGCCGTTTCCGATCTCCCACACCATGATCCACATGGCCTTCTGCTCCTCCCTCGCCTTCCTCCTCGTCCGCGTCTTCCGCCTCGTCGACGCCGTCTCCATCTCCCGCGACCTCTACCTCAAGTCGGTCGTCCCCATCGGCGCCCTCTACGCCCTCTCCCTCTGGTTCTCCAATTCCGCCTACATCTTCCTCTCCGTCTCCTTCATCCAGATGCTCAAGGCCCTTATGCCGGTCGCCGTCTACTCCATCGGCGTCGCCTTCAAGAAGGACGCTTTCAAGAGCGACACCATGCTCAACATGGTCTCCATTTCCGTCGGCGTCGCTATCGCGGCGTACGGGGAAGCCAAATTTAACTCCTGGGGAGTTACATTGCAGCTGTTGGCCGTGGCGTTCGAGGCCACAAGGTTGGTTCTGATTCAGATTCTACTTAATGCAAAGGGTATTAGTTTGAATCCGATTACTTCGCTGTATTATGTTGCGCCGTGTTGTTTCGTGTTCTTGTGCGTGCCGTGGGTCATTGTTGAGCTGCCGGTGTTGAGGGAGAGCTCGAGTTTTCACTTTGATTTTGTGATTTTCGGGACGAATTCGGTGTGCGCTTTCGCTTTGAATCTGGCTGTGTTTCTGTTGGTGGGGAAGACCTCAGCTTTGACTATGAATGTTGCTGGGGTTGTCAAAGATTGGCTTTTGATTGCGTTTTCATGGTCGGTGATCAAGGATATGGTGACACCCATCAATTTGATCGGGTACCTGATTGCGTTTGGCGGGGTTGCGTATTACAATCATGCCAAATTGCAGGGGCTTAAGGCAGCCGAGGCGCAAAGGAAGTCACAGCAGGACAATGTGGAGGCCGGTAGGTTGTTGGAGGAGAGAGACGGGGAAGGGAACGGAAAGAAGAGTGAGACTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

346

Amino Acids

38.18

Weight (kDa)

8.81

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 16 - 302 1.4e-22 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 2 cut(s) 266, 870
AccI GTMKAC 3 cut(s) 90, 213, 366
AccII CGCG 3 cut(s) 198, 234, 455
AciI CCGC 6 cut(s) 196, 205, 232, 303, 455, 888
AclWI GGATC 2 cut(s) 71, 148
AcoI YGGCCR 2 cut(s) 128, 507
AcsI RAATTY 3 cut(s) 57, 473, 709
AcyI GRCGYC 4 cut(s) 216, 267, 378, 444
AfaI GTAC 4 cut(s) 101, 122, 461, 872
AfiI CCNNNNNNNGG 2 cut(s) 250, 355
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 4 cut(s) 388, 403, 577, 733
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 4 cut(s) 502, 652, 672, 770
AluI AGCT 4 cut(s) 502, 652, 672, 770
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 5 cut(s) 226, 328, 433, 990, 1019
AlwI GGATC 2 cut(s) 71, 148
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 6 cut(s) 128, 162, 345, 507, 522, 972
ApeKI GCWGC 3 cut(s) 499, 652, 932
ApoI RAATTY 3 cut(s) 57, 473, 709
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp718I GGTACC 1 cut(s) 870
AspLEI GCGC 5 cut(s) 7, 269, 607, 722, 943
AspS9I GGNCC 2 cut(s) 31, 346
AsuHPI GGTGA 4 cut(s) 34, 70, 844, 859
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 266, 870
BanII GRGCYC 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 193, 767
Bbv12I GWGCWC 1 cut(s) 674
BbvCI CCTCAGC 1 cut(s) 766
BbvI GCAGC 3 cut(s) 511, 639, 944
BccI CCATC 4 cut(s) 233, 269, 380, 863
BceAI ACGGC 6 cut(s) 115, 203, 347, 494, 592, 619
BciT130I CCWGG 1 cut(s) 484
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 5 cut(s) 226, 328, 433, 990, 1019
BfoI RGCGCY 2 cut(s) 8, 270
BfrI CTTAAG 1 cut(s) 926
BisI GCNGC 4 cut(s) 456, 500, 653, 933
BlsI GCNGC 4 cut(s) 457, 501, 654, 934
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 31, 346
BmiI GGNNCC 2 cut(s) 268, 872
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 2 cut(s) 193, 767
Bpu10I CCTNAGC 1 cut(s) 766
BpuEI CTTGAG 2 cut(s) 230, 326
BsaHI GRCGYC 4 cut(s) 216, 267, 378, 444
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 483, 510, 635, 936
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 266, 296, 413, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 355
Bse118I RCCGGY 3 cut(s) 355, 655, 974
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 4 cut(s) 483, 510, 635, 936
BseGI GGATG 2 cut(s) 102, 330
BseLI CCNNNNNNNGG 2 cut(s) 250, 355
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 780, 1020
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 4 cut(s) 26, 163, 179, 1004
BseXI GCAGC 3 cut(s) 511, 639, 944
BseYI CCCAGC 1 cut(s) 788
Bsh1236I CGCG 3 cut(s) 198, 234, 455
Bsh1285I CGRYCG 3 cut(s) 112, 255, 360
BshFI GGCC 6 cut(s) 130, 164, 347, 509, 524, 974
BshNI GGYRCC 2 cut(s) 266, 870
BsiEI CGRYCG 3 cut(s) 112, 255, 360
BsiHKAI GWGCWC 1 cut(s) 674
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 4 cut(s) 112, 356, 656, 975
BsiWI CGTACG 1 cut(s) 459
BslFI GGGAC 2 cut(s) 242, 718
BslI CCNNNNNNNGG 2 cut(s) 250, 355
BsmAI GTCTC 5 cut(s) 226, 328, 433, 990, 1019
BsmBI CGTCTC 3 cut(s) 226, 328, 990
BsmFI GGGAC 2 cut(s) 242, 718
BsnI GGCC 6 cut(s) 130, 164, 347, 509, 524, 974
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 673
Bsp1286I GDGCHC 1 cut(s) 674
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 63, 138, 153, 834, 864
BspACI CCGC 6 cut(s) 196, 205, 232, 303, 455, 888
BspANI GGCC 6 cut(s) 130, 164, 347, 509, 524, 974
BspCNI CTCAG 2 cut(s) 779, 1021
BspFNI CGCG 3 cut(s) 198, 234, 455
BspLI GGNNCC 2 cut(s) 268, 872
BspPI GGATC 2 cut(s) 71, 148
BspT107I GGYRCC 2 cut(s) 266, 870
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 494
BsrFI RCCGGY 3 cut(s) 355, 655, 974
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 3 cut(s) 355, 655, 974
BssECI CCNNGG 4 cut(s) 483, 510, 635, 936
BssMI GATC 5 cut(s) 63, 138, 153, 834, 864
BssNI GRCGYC 4 cut(s) 216, 267, 378, 444
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 1013
BstACI GRCGYC 4 cut(s) 216, 267, 378, 444
BstAFI CTTAAG 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 766, 1029
BstDSI CCRYGG 2 cut(s) 510, 635
BstF5I GGATG 2 cut(s) 102, 330
BstFNI CGCG 3 cut(s) 198, 234, 455
BstH2I RGCGCY 2 cut(s) 8, 270
BstHHI GCGC 5 cut(s) 7, 269, 607, 722, 943
BstKTI GATC 5 cut(s) 66, 141, 156, 837, 867
BstMAI GTCTC 5 cut(s) 226, 328, 433, 990, 1019
BstMBI GATC 5 cut(s) 63, 138, 153, 834, 864
BstMCI CGRYCG 3 cut(s) 112, 255, 360
BstMWI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 482
BstUI CGCG 3 cut(s) 198, 234, 455
BstV1I GCAGC 3 cut(s) 511, 639, 944
BstV2I GAAGAC 2 cut(s) 193, 767
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuRI GGCC 6 cut(s) 130, 164, 347, 509, 524, 974
BtgI CCRYGG 2 cut(s) 510, 635
BtsCI GGATG 2 cut(s) 102, 330
Cac8I GCNNGC 1 cut(s) 632
CfoI GCGC 5 cut(s) 7, 269, 607, 722, 943
Cfr10I RCCGGY 3 cut(s) 355, 655, 974
Cfr13I GGNCC 2 cut(s) 31, 346
CseI GACGC 5 cut(s) 187, 224, 367, 404, 433
Csp6I GTAC 4 cut(s) 100, 121, 460, 871
CviAII CATG 6 cut(s) 151, 160, 415, 424, 825, 908
CviQI GTAC 4 cut(s) 100, 121, 460, 871
DdeI CTNAG 2 cut(s) 766, 1029
DinI GGCGCC 1 cut(s) 268
DpnI GATC 5 cut(s) 65, 140, 155, 836, 866
DpnII GATC 5 cut(s) 63, 138, 153, 834, 864
EaeI YGGCCR 2 cut(s) 128, 507
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 2 cut(s) 194, 292
Ecl136II GAGCTC 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 31, 346
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 674
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 3 cut(s) 226, 328, 990
FaeI CATG 6 cut(s) 154, 163, 418, 427, 828, 911
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 242, 718
FatI CATG 6 cut(s) 150, 159, 414, 423, 824, 907
FauI CCCGC 2 cut(s) 239, 881
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 3 cut(s) 90, 213, 366
Fnu4HI GCNGC 4 cut(s) 456, 500, 653, 933
FokI GGATG 2 cut(s) 89, 317
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 4 cut(s) 456, 500, 653, 933
GlaI GCGC 5 cut(s) 6, 268, 606, 721, 942
GluI GCNGC 4 cut(s) 456, 500, 653, 933
GsaI CCCAGC 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 8, 270
HaeIII GGCC 6 cut(s) 130, 164, 347, 509, 524, 974
HapII CCGG 4 cut(s) 112, 356, 656, 975
HgaI GACGC 5 cut(s) 187, 224, 367, 404, 433
HhaI GCGC 5 cut(s) 7, 269, 607, 722, 943
Hin1I GRCGYC 4 cut(s) 216, 267, 378, 444
Hin1II CATG 6 cut(s) 154, 163, 418, 427, 828, 911
Hin6I GCGC 5 cut(s) 5, 267, 605, 720, 941
HinP1I GCGC 5 cut(s) 5, 267, 605, 720, 941
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 4 cut(s) 541, 547, 577, 733
HpaII CCGG 4 cut(s) 112, 356, 656, 975
HphI GGTGA 4 cut(s) 34, 70, 844, 859
Hpy166II GTNNAC 3 cut(s) 91, 214, 367
Hpy188I TCNGA 6 cut(s) 13, 56, 138, 540, 546, 582
Hpy188III TCNNGA 4 cut(s) 334, 388, 403, 703
Hpy8I GTNNAC 3 cut(s) 91, 214, 367
Hpy99I CGWCG 6 cut(s) 56, 215, 218, 383, 443, 449
HpyAV CCTTC 8 cut(s) 22, 85, 175, 193, 337, 385, 394, 998
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 499, 560, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
HpyF3I CTNAG 2 cut(s) 766, 1029
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 4 cut(s) 216, 267, 378, 444
Hsp92II CATG 6 cut(s) 154, 163, 418, 427, 828, 911
HspAI GCGC 5 cut(s) 5, 267, 605, 720, 941
KasI GGCGCC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 5 cut(s) 63, 138, 153, 834, 864
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 3 cut(s) 511, 639, 944
LweI GCATC 1 cut(s) 327
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 490, 847, 951
MalI GATC 5 cut(s) 65, 140, 155, 836, 866
MboI GATC 5 cut(s) 63, 138, 153, 834, 864
MboII GAAGA 5 cut(s) 37, 193, 304, 772, 1030
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 6 cut(s) 57, 298, 473, 709, 859, 914
Mly113I GGCGCC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 34, 966
MseI TTAA 3 cut(s) 477, 555, 927
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 502
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 4 cut(s) 112, 356, 656, 975
MspR9I CCNGG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 3 cut(s) 198, 234, 455
MwoI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
NarI GGCGCC 1 cut(s) 267
NdeII GATC 5 cut(s) 63, 138, 153, 834, 864
NlaIII CATG 6 cut(s) 154, 163, 418, 427, 828, 911
NlaIV GGNNCC 2 cut(s) 268, 872
NmeAIII GCCGAG 1 cut(s) 961
NmuCI GTSAC 2 cut(s) 847, 951
PaeR7I CTCGAG 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 4 cut(s) 541, 547, 577, 733
Pfl23II CGTACG 1 cut(s) 459
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 457, 501, 654, 934
PluTI GGCGCC 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 482
PspFI CCCAGC 1 cut(s) 788
PspGI CCWGG 1 cut(s) 482
PspLI CGTACG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 268, 872
PspPI GGNCC 2 cut(s) 31, 346
PspPPI RGGWCCY 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 673
PsyI GACNNNGTC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 4 cut(s) 101, 122, 461, 872
RsaNI GTAC 4 cut(s) 100, 121, 460, 871
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 674
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 3 cut(s) 477, 555, 927
SatI GCNGC 4 cut(s) 456, 500, 653, 933
Sau3AI GATC 5 cut(s) 63, 138, 153, 834, 864
Sau96I GGNCC 2 cut(s) 31, 346
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 1 cut(s) 327
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 673
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 673
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 4 cut(s) 245, 341, 673, 926
SmoI CTYRAG 4 cut(s) 245, 341, 673, 926
Sse9I AATT 6 cut(s) 57, 298, 473, 709, 859, 914
SsiI CCGC 6 cut(s) 196, 205, 232, 303, 455, 888
SspDI GGCGCC 1 cut(s) 266
SstI GAGCTC 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 54
TaqI TCGA 4 cut(s) 108, 213, 519, 674
TaqII GACCGA 1 cut(s) 241
TasI AATT 6 cut(s) 57, 298, 473, 709, 859, 914
TatI WGTACW 2 cut(s) 99, 120
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 4 cut(s) 541, 547, 577, 733
Tru1I TTAA 3 cut(s) 477, 555, 927
Tru9I TTAA 3 cut(s) 477, 555, 927
TseFI GTSAC 2 cut(s) 847, 951
TseI GCWGC 3 cut(s) 499, 652, 932
Tsp45I GTSAC 2 cut(s) 847, 951
TspDTI ATGAA 3 cut(s) 319, 794, 813
TspGWI ACGGA 3 cut(s) 310, 427, 1026
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 3 cut(s) 57, 473, 709
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 421
XhoI CTCGAG 1 cut(s) 673
XmiI GTMKAC 3 cut(s) 90, 213, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.