Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008215.1

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

2850 .. 3380

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgcgtgtcggcggtgtcgaagttactggggaagacgcgcgactggatcgtggcactcaagacattgatgctggtgcaccgcctcgtgaacgacggcgaccctgtcttccaggacgagaccctgtcttccgtacatttgtgttgagccaaatcttgttgacatctaaagggatcaccttgaatcccattacctctttgtactatgtggctccttgttgcttggcttttctgttggtgccttggatctatgtggagtacccaacactgagggacacctcgagtttccatttcgattacgtgattttcgggatcaattccttctgtgcgttctctttgaatcttgctgtgttcttgcttgtggggaagacctcggctttgacgatgaatgtggcgggtgtggtgaaagattggatcttgattgccttctcttggtctgtgatcaaggacactgtgaccccaatcaatctggtgggttatggactaacactcgaaattgcagtgttcaaatatctaacaagctatcgcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

176

Amino Acids

19.67

Weight (kDa)

8.72

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccII	CGCG	2 cut(s)	38, 40
AciI	CCGC	3 cut(s)	12, 80, 392
AclWI	GGATC	5 cut(s)	54, 179, 251, 317, 419
AfaI	GTAC	3 cut(s)	133, 200, 257
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	181, 337, 505
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	1 cut(s)	519
AluI	AGCT	1 cut(s)	519
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	111
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	5 cut(s)	54, 179, 251, 317, 419
Ama87I	CYCGRG	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	75
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	166, 412
AvaI	CYCGRG	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	4 cut(s)	39, 98, 118, 371
Bbv12I	GWGCWC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	210, 237
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	4 cut(s)	39, 98, 118, 371
BpuEI	CTTGAG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	239, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	31, 48
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	239, 369
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	31, 48
BseSI	GKGCMC	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	38, 40
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
BspACI	CCGC	3 cut(s)	12, 80, 392
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	38, 40
BspLI	GGNNCC	2 cut(s)	210, 237
BspPI	GGATC	5 cut(s)	54, 179, 251, 317, 419
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	31, 48
BssECI	CCNNGG	2 cut(s)	239, 369
BssMI	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	451
BstBAI	YACGTR	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	266
BstFNI	CGCG	2 cut(s)	38, 40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	49, 174, 246, 312, 414, 441
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	2 cut(s)	38, 40
BstV2I	GAAGAC	4 cut(s)	39, 98, 118, 371
BstX2I	RGATCY	2 cut(s)	243, 411
BstYI	RGATCY	2 cut(s)	243, 411
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	3 cut(s)	263, 447, 504
CfoI	GCGC	1 cut(s)	40
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	132, 199, 256
CviJI	RGCY	5 cut(s)	147, 209, 224, 374, 519
CviKI_1	RGCY	5 cut(s)	147, 209, 224, 374, 519
CviQI	GTAC	3 cut(s)	132, 199, 256
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	6 cut(s)	48, 173, 245, 311, 413, 440
DpnII	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
Eco130I	CCWWGG	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaiI	YATR	3 cut(s)	204, 249, 477
FaqI	GGGAC	1 cut(s)	284
FauI	CCCGC	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	181, 337
HphI	GGTGA	2 cut(s)	166, 412
Hpy166II	GTNNAC	3 cut(s)	77, 89, 159
Hpy188III	TCNNGA	4 cut(s)	59, 86, 307, 415
Hpy8I	GTNNAC	3 cut(s)	77, 89, 159
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	328, 433
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	77, 497
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	297
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	12, 29, 57, 96, 115, 123, 135, 452
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	22, 451
MalI	GATC	6 cut(s)	48, 173, 245, 311, 413, 440
MboI	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
MboII	GAAGA	4 cut(s)	44, 98, 118, 376
MflI	RGATCY	2 cut(s)	243, 411
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	313, 492
MnlI	CCTC	5 cut(s)	93, 202, 261, 286, 379
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	2 cut(s)	38, 40
NdeII	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
NlaIV	GGNNCC	2 cut(s)	210, 237
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 377
PfeI	GAWTC	2 cut(s)	181, 337
PflFI	GACNNNGTC	2 cut(s)	102, 122
PfoI	TCCNGGA	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	210, 237
PspXI	VCTCGAGB	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	243, 411
PsyI	GACNNNGTC	2 cut(s)	102, 122
RsaI	GTAC	3 cut(s)	133, 200, 257
RsaNI	GTAC	3 cut(s)	132, 199, 256
Sau3AI	GATC	6 cut(s)	46, 171, 243, 309, 411, 438
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	179, 194, 278, 300, 371, 521
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	57, 277
SmoI	CTYRAG	2 cut(s)	57, 277
Sse9I	AATT	2 cut(s)	313, 492
SsiI	CCGC	3 cut(s)	12, 80, 392
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	18, 278, 291, 489
TasI	AATT	2 cut(s)	313, 492
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	181, 337
TscAI	CASTG	3 cut(s)	270, 454, 504
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	3 cut(s)	270, 454, 504
Tth111I	GACNNNGTC	2 cut(s)	102, 122
VneI	GTGCAC	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.