Rmu_sc0006261.1_g000003

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006261.1
OG0001025
Physical Location & Seq
Reverse (-)
13753 .. 14494
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006261.1_g000003.1.cds

Sequence Viewer

Length: 555 bp
atgccactaaccaaaatctctctatctcttcgccgttttacccattcgcatcctaatccaagtctgatccgccgaatccctcgtcgtctgcaaccctctcacaagccacttccgtcccttaccttagctcggctctcgatctcgtttggcgtggcagttgcaacttatagggagttccccgtgttgaaggagactttgagtttccactttgattttgtcattttcgggacgaatttgctctgtgcttttgtgttgaacctggctgtgtttctgctggaggggaagacttcggctttgacaatgaatgttgccgtggttgtgaaaaattggctcttgattacgttttcgtggtcggtgatcaaggataccatgacgccaatcaatctgattgggtatctgattgagtttatcggtgtggcttattacaatcatgcaaaattgcaggcgcttaaggccaccaaggcacagaagaaggctcaacaggacaatgtggaggctgggaagttgttggaggagagagatgaggatgcaaagaagaacgaaactcaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

184

Amino Acids

20.81

Weight (kDa)

9.71

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 129
AflII CTTAAG 1 cut(s) 449
AgsI TTSAA 2 cut(s) 187, 256
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 277, 309
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 18, 296
BciT130I CCWGG 1 cut(s) 260
BciVI GTATCC 1 cut(s) 358
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 449
BfrI CTTAAG 1 cut(s) 449
BfuI GTATCC 1 cut(s) 358
BglI GCCNNNNNGGC 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 58, 517
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 312, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 312, 459
BseGI GGATG 2 cut(s) 49, 532
BseLI CCNNNNNNNGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 527
BseYI CCCAGC 1 cut(s) 497
BshFI GGCC 1 cut(s) 455
BslFI GGGAC 2 cut(s) 100, 241
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 100, 241
BsnI GGCC 1 cut(s) 455
Bsp143I GATC 3 cut(s) 66, 138, 357
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 455
BspPI GGATC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 312, 459
BssMI GATC 3 cut(s) 66, 138, 357
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 124, 546
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 49, 532
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 69, 141, 360
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 66, 138, 357
BstMWI GCNNNNNNNGC 2 cut(s) 452, 461
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 290
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 49, 532
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 1 cut(s) 448
CseI GACGC 1 cut(s) 382
CviAII CATG 2 cut(s) 370, 431
DdeI CTNAG 2 cut(s) 124, 546
DpnI GATC 3 cut(s) 68, 140, 359
DpnII GATC 3 cut(s) 66, 138, 357
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 2 cut(s) 373, 434
FaiI YATR 3 cut(s) 168, 371, 432
FaqI GGGAC 2 cut(s) 100, 241
FatI CATG 2 cut(s) 369, 430
FbaI TGATCA 1 cut(s) 357
FokI GGATG 2 cut(s) 36, 539
GlaI GCGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 1 cut(s) 455
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 373, 434
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 66, 387, 399
Hpy188III TCNNGA 4 cut(s) 136, 226, 334, 548
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 181, 466
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 5 cut(s) 91, 161, 434, 442, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 461
HpyF3I CTNAG 2 cut(s) 124, 546
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 373, 434
HspAI GCGC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 3 cut(s) 66, 138, 357
LpnPI CCDG 7 cut(s) 245, 260, 272, 428, 467, 483, 533
LweI GCATC 2 cut(s) 58, 517
MaeII ACGT 1 cut(s) 341
MalI GATC 3 cut(s) 68, 140, 359
MboI GATC 3 cut(s) 66, 138, 357
MboII GAAGA 4 cut(s) 20, 295, 481, 547
MluCI AATT 3 cut(s) 232, 325, 437
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 6 cut(s) 90, 106, 271, 487, 505, 517
MseI TTAA 1 cut(s) 450
MspCI CTTAAG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 452, 461
NdeII GATC 3 cut(s) 66, 138, 357
NlaIII CATG 2 cut(s) 373, 434
NmeAIII GCCGAG 1 cut(s) 109
PfeI GAWTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 450
Sau3AI GATC 3 cut(s) 66, 138, 357
ScrFI CCNGG 1 cut(s) 260
SetI ASST 4 cut(s) 125, 130, 261, 344
SfaNI GCATC 2 cut(s) 58, 517
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 232, 325, 437
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 459
TaiI ACGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 232, 325, 437
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 102
Vha464I CTTAAG 1 cut(s) 449
XapI RAATTY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.