Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

5924445 .. 5926707

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTGGAATGAGAGTTTTGGCTAGTCAACACAGCAGTGAAGCCGTGTTGATAGCAAGTGAAACCGATGTTGCTAGCTCGGCAAAACTGAATCGTGTGAGATCGGCGAGCCGAATCGGTGGCGGAGATGGAGCCGAGCACGATCCGAAGGAGATTGGAGCGGTCAAGGACCGGACAAGCATCGGAATCGCGAAGGTAGCCAGCAACATGGCGCCGGACCCGGAGGTCGCCATCGTGAAGGCCACCGGCCACAAGGACGAGCCGGCCGGCGAGAAGTACATCCGGGAGATCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

98

Amino Acids

10.19

Weight (kDa)

6.28

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	123, 161
AclWI	GGATC	2 cut(s)	137, 283
AcoI	YGGCCR	2 cut(s)	247, 264
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	137, 283
AoxI	GGCC	3 cut(s)	240, 247, 264
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	169, 217
AsuC2I	CCSGG	2 cut(s)	221, 284
AsuNHI	GCTAGC	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	169, 217
BanI	GGYRCC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	2 cut(s)	122, 239
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	2 cut(s)	221, 284
BfaI	CTAG	3 cut(s)	24, 75, 295
BfoI	RGCGCY	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	221, 284
Bme18I	GGWCC	2 cut(s)	169, 217
BmgT120I	GGNCC	2 cut(s)	169, 217
BmiI	GGNNCC	3 cut(s)	133, 213, 219
BmrFI	CCNGG	2 cut(s)	221, 284
BmsI	GCATC	1 cut(s)	189
BmtI	GCTAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	221, 284
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	171
Bse118I	RCCGGY	3 cut(s)	245, 262, 266
BseGI	GGATG	1 cut(s)	279
BseX3I	CGGCCG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	242, 249, 266
BshNI	GGYRCC	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	7 cut(s)	172, 215, 221, 246, 263, 267, 283
BsnI	GGCC	3 cut(s)	242, 249, 266
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	101, 142, 288
Bsp68I	TCGCGA	1 cut(s)	191
BspACI	CCGC	2 cut(s)	123, 161
BspANI	GGCC	3 cut(s)	242, 249, 266
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	133, 213, 219
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	137, 283
BspT107I	GGYRCC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	161
BsrFI	RCCGGY	3 cut(s)	245, 262, 266
BssAI	RCCGGY	3 cut(s)	245, 262, 266
BssMI	GATC	3 cut(s)	101, 142, 288
BssNI	GRCGYC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	5 cut(s)	76, 109, 202, 264, 268
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	104, 145, 291
BstMBI	GATC	3 cut(s)	101, 142, 288
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 197
BstSCI	CCNGG	2 cut(s)	219, 282
BstUI	CGCG	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	288
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	288
BstZI	CGGCCG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	242, 249, 266
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	191
Cac8I	GCNNGC	5 cut(s)	76, 109, 202, 264, 268
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	3 cut(s)	245, 262, 266
Cfr13I	GGNCC	2 cut(s)	169, 217
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	208
CviQI	GTAC	1 cut(s)	277
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	103, 144, 290
DpnII	GATC	3 cut(s)	101, 142, 288
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	247, 264
EagI	CGGCCG	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	169, 217
Eco52I	CGGCCG	1 cut(s)	264
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FatI	CATG	1 cut(s)	207
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	3 cut(s)	24, 75, 295
GlaI	GCGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	242, 249, 266
HapII	CCGG	7 cut(s)	172, 215, 221, 246, 263, 267, 283
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	91, 114, 186
HpaII	CCGG	7 cut(s)	172, 215, 221, 246, 263, 267, 283
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	147, 185
Hpy188III	TCNNGA	2 cut(s)	190, 235
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	142, 187, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 197
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KroI	GCCGGC	2 cut(s)	262, 266
KroNI	GCCGGC	2 cut(s)	264, 268
Kzo9I	GATC	3 cut(s)	101, 142, 288
LmnI	GCTCC	2 cut(s)	131, 158
LpnPI	CCDG	7 cut(s)	185, 214, 228, 234, 259, 276, 280
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	24, 75, 295
MalI	GATC	3 cut(s)	103, 144, 290
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	3 cut(s)	101, 142, 288
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	141
Mly113I	GGCGCC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	217
MroNI	GCCGGC	2 cut(s)	262, 266
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	7 cut(s)	172, 215, 221, 246, 263, 267, 283
MspR9I	CCNGG	2 cut(s)	221, 284
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	80, 197
NaeI	GCCGGC	2 cut(s)	264, 268
NarI	GGCGCC	1 cut(s)	212
NciI	CCSGG	2 cut(s)	221, 284
NdeII	GATC	3 cut(s)	101, 142, 288
NgoMIV	GCCGGC	2 cut(s)	262, 266
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	133, 213, 219
NmeAIII	GCCGAG	2 cut(s)	59, 160
NruI	TCGCGA	1 cut(s)	191
OliI	CACNNNNGTG	1 cut(s)	36
PdiI	GCCGGC	2 cut(s)	264, 268
PfeI	GAWTC	3 cut(s)	91, 114, 186
PfoI	TCCNGGA	1 cut(s)	282
PluTI	GGCGCC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	133, 213, 219
PspPI	GGNCC	2 cut(s)	169, 217
PsuI	RGATCY	1 cut(s)	288
RruI	TCGCGA	1 cut(s)	191
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	101, 142, 288
Sau96I	GGNCC	2 cut(s)	169, 217
ScrFI	CCNGG	2 cut(s)	221, 284
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	3 cut(s)	80, 198, 228
SfaNI	GCATC	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	213
SinI	GGWCC	2 cut(s)	169, 217
SmiMI	CAYNNNNRTG	1 cut(s)	36
SsiI	CCGC	2 cut(s)	123, 161
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	3 cut(s)	24, 75, 295
StyD4I	CCNGG	2 cut(s)	219, 282
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	91, 114, 186
TscAI	CASTG	1 cut(s)	43
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	169, 217
XspI	CTAG	3 cut(s)	24, 75, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.