MD15G1173600.v1.1

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001025
Physical Location & Seq
Forward (+)
13568766 .. 13571182
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1173600.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCGCTTTCAGAGGGGGTGGTGAAGAAGGTCCTCCTTTCATACGCTTACGTCTCCGTCTGGATCTTCCTCTCCTTCACCGTCATCGTCTACAACAAGTACATCCTCGACCGGAAAATGTACAACTGGCCGTTTCCCATCTCCCTCACCATGATCCACATGGCCTTCTGCTCCTCCCTCGCATTCCTCCTCGTCCGCGTCCTCCGCCTCGTCGACGCCGTCTCCATCTCCCGCGACGTCTACCTCAAGTCCGTCGTCCCCATCGGCGCCCTCTACGCCCTCTCCCTCTGGTTCTCCAACTCCGCCTACATCTTCCTCTCCGTCTCCTTCATCCAGATGCTCAAGGCCCTCATGCCCGTCGCGGTCTACTCCATCGGCGTCGCCTTCAAAAAGGACGCCTTCAAGAGCGACACCATGCTCAACATGGTCTCCATATCCGTCGGCGTTGCCATCGCAGCGTACGGGGAGGCGAAATTCAACTCATGGGGAGTCACATTGCAGCTGTTGGCCGTGGCGTTCGAGGCCACGAGGTTGGTTCTCATTCAGATTCTGCTTAATGCTAAGGGTATTAGCTTGAATCCGATTACTTCACTTTACTATGTTGCACCGTGTTGTTTCGTGTTCTTGTGCGTGCCGTGGGTCATCGTTGAGCTGCCGGTGTTGAGGCAGACCTCGAGTTTTCACTTTGATTTCGTGATTTTTGGGACAAATTCACTGTGCGCGTTTGCGTTGAATCTGGCGGTGTTTCTGTTAGTGGGAAAGACCTCTGCTTTGACTATGAATGTTGCTGGGGTTGTCAAAGATTGGCTTTTGATTGCATTTTCGTGGTCTGTGATCAAGGATACCGTGACACCTATCAATTTGATGGGGTACCTGATTGCGTTTGGCGGTGTTGCGTACTACAATCATGCCAAATTGCAGGGGCTTAAGGCGGCCGATGCGCAGAGGAAGTCTCAACAGGACAATGTGGAGGCCGGTAGGTTGTTGGAGGAGAGGGACGGAGAAGGGAACGGAAAGAAGAGTGAGACTAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

346

Amino Acids

38.17

Weight (kDa)

9.13

Isoelectric Point (pI)

21.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 17 - 302 1.2e-22 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
Acc16I TGCGCA 1 cut(s) 942
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 2 cut(s) 266, 870
AccI GTMKAC 4 cut(s) 90, 213, 240, 366
AccII CGCG 4 cut(s) 198, 234, 362, 722
AciI CCGC 8 cut(s) 196, 205, 232, 303, 362, 740, 888, 932
AclWI GGATC 2 cut(s) 71, 148
AcoI YGGCCR 3 cut(s) 128, 507, 933
AcsI RAATTY 2 cut(s) 473, 709
AcyI GRCGYC 5 cut(s) 216, 237, 267, 378, 396
AfaI GTAC 5 cut(s) 101, 122, 461, 872, 899
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 5 cut(s) 388, 403, 478, 577, 733
AluBI AGCT 3 cut(s) 502, 573, 652
AluI AGCT 3 cut(s) 502, 573, 652
Alw26I GTCTC 6 cut(s) 58, 226, 328, 433, 957, 1019
AlwI GGATC 2 cut(s) 71, 148
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 7 cut(s) 128, 162, 345, 507, 522, 933, 972
ApeKI GCWGC 3 cut(s) 455, 499, 652
ApoI RAATTY 2 cut(s) 473, 709
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp718I GGTACC 1 cut(s) 870
AspLEI GCGC 4 cut(s) 7, 269, 722, 943
AspS9I GGNCC 2 cut(s) 31, 346
AsuHPI GGTGA 3 cut(s) 34, 70, 139
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 266, 870
BauI CACGAG 1 cut(s) 526
BbvI GCAGC 3 cut(s) 467, 511, 639
BccI CCATC 6 cut(s) 146, 233, 269, 380, 458, 859
BceAI ACGGC 4 cut(s) 115, 203, 494, 619
BciVI GTATCC 1 cut(s) 835
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 6 cut(s) 58, 226, 328, 433, 957, 1019
BfoI RGCGCY 2 cut(s) 8, 270
BfrI CTTAAG 1 cut(s) 926
BfuI GTATCC 1 cut(s) 835
BisI GCNGC 4 cut(s) 456, 500, 653, 933
BlsI GCNGC 4 cut(s) 457, 501, 654, 934
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 31, 346
BmiI GGNNCC 2 cut(s) 268, 872
BmsI GCATC 2 cut(s) 327, 928
BplI GAGNNNNNCTC 2 cut(s) 937, 969
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 230, 326
BsaHI GRCGYC 5 cut(s) 216, 237, 267, 378, 396
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 2 cut(s) 510, 635
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 266, 296, 413, 443
Bse118I RCCGGY 2 cut(s) 655, 974
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 510, 635
BseGI GGATG 2 cut(s) 102, 330
BseMI GCAATG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 3 cut(s) 163, 179, 1004
BseX3I CGGCCG 1 cut(s) 933
BseXI GCAGC 3 cut(s) 467, 511, 639
BseYI CCCAGC 1 cut(s) 788
Bsh1236I CGCG 4 cut(s) 198, 234, 362, 722
Bsh1285I CGRYCG 2 cut(s) 112, 936
BshFI GGCC 7 cut(s) 130, 164, 347, 509, 524, 935, 974
BshNI GGYRCC 2 cut(s) 266, 870
BsiEI CGRYCG 2 cut(s) 112, 936
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 3 cut(s) 112, 656, 975
BsiWI CGTACG 1 cut(s) 459
BslFI GGGAC 3 cut(s) 242, 718, 1010
BsmAI GTCTC 6 cut(s) 58, 226, 328, 433, 957, 1019
BsmBI CGTCTC 3 cut(s) 58, 226, 328
BsmFI GGGAC 3 cut(s) 242, 718, 1010
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 7 cut(s) 130, 164, 347, 509, 524, 935, 974
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 673
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 3 cut(s) 63, 153, 834
BspACI CCGC 8 cut(s) 196, 205, 232, 303, 362, 740, 888, 932
BspANI GGCC 7 cut(s) 130, 164, 347, 509, 524, 935, 974
BspFNI CGCG 4 cut(s) 198, 234, 362, 722
BspLI GGNNCC 2 cut(s) 268, 872
BspPI GGATC 2 cut(s) 71, 148
BspT107I GGYRCC 2 cut(s) 266, 870
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 494
BsrFI RCCGGY 2 cut(s) 655, 974
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 2 cut(s) 655, 974
BssECI CCNNGG 2 cut(s) 510, 635
BssMI GATC 3 cut(s) 63, 153, 834
BssNI GRCGYC 5 cut(s) 216, 237, 267, 378, 396
BssSI CACGAG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 526
Bst4CI ACNGT 4 cut(s) 82, 609, 717, 847
Bst6I CTCTTC 1 cut(s) 1013
BstACI GRCGYC 5 cut(s) 216, 237, 267, 378, 396
BstAFI CTTAAG 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 561, 1029
BstDSI CCRYGG 2 cut(s) 510, 635
BstF5I GGATG 2 cut(s) 102, 330
BstFNI CGCG 4 cut(s) 198, 234, 362, 722
BstH2I RGCGCY 2 cut(s) 8, 270
BstHHI GCGC 4 cut(s) 7, 269, 722, 943
BstKTI GATC 3 cut(s) 66, 156, 837
BstMAI GTCTC 6 cut(s) 58, 226, 328, 433, 957, 1019
BstMBI GATC 3 cut(s) 63, 153, 834
BstMCI CGRYCG 2 cut(s) 112, 936
BstMWI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
BstUI CGCG 4 cut(s) 198, 234, 362, 722
BstV1I GCAGC 3 cut(s) 467, 511, 639
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 63
BstZI CGGCCG 1 cut(s) 933
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 7 cut(s) 130, 164, 347, 509, 524, 935, 974
BtgI CCRYGG 2 cut(s) 510, 635
BtgZI GCGATG 1 cut(s) 436
BtsCI GGATG 2 cut(s) 102, 330
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 1 cut(s) 632
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 4 cut(s) 7, 269, 722, 943
Cfr10I RCCGGY 2 cut(s) 655, 974
Cfr13I GGNCC 2 cut(s) 31, 346
CseI GACGC 4 cut(s) 187, 224, 367, 404
Csp6I GTAC 5 cut(s) 100, 121, 460, 871, 898
CviAII CATG 7 cut(s) 151, 160, 352, 415, 424, 483, 908
CviQI GTAC 5 cut(s) 100, 121, 460, 871, 898
DdeI CTNAG 2 cut(s) 561, 1029
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 65, 155, 836
DpnII GATC 3 cut(s) 63, 153, 834
EaeI YGGCCR 3 cut(s) 128, 507, 933
EagI CGGCCG 1 cut(s) 933
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 2 cut(s) 194, 292
EclXI CGGCCG 1 cut(s) 933
Eco31I GGTCTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 673
EcoO109I RGGNCCY 2 cut(s) 31, 346
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 3 cut(s) 58, 226, 328
FaeI CATG 7 cut(s) 154, 163, 355, 418, 427, 486, 911
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 792, 824
FaqI GGGAC 3 cut(s) 242, 718, 1010
FatI CATG 7 cut(s) 150, 159, 351, 414, 423, 482, 907
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 4 cut(s) 90, 213, 240, 366
Fnu4HI GCNGC 4 cut(s) 456, 500, 653, 933
FokI GGATG 2 cut(s) 89, 317
Fsp4HI GCNGC 4 cut(s) 456, 500, 653, 933
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 4 cut(s) 6, 268, 721, 942
GluI GCNGC 4 cut(s) 456, 500, 653, 933
GsaI CCCAGC 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 8, 270
HaeIII GGCC 7 cut(s) 130, 164, 347, 509, 524, 935, 974
HapII CCGG 3 cut(s) 112, 656, 975
HgaI GACGC 4 cut(s) 187, 224, 367, 404
HhaI GCGC 4 cut(s) 7, 269, 722, 943
Hin1I GRCGYC 5 cut(s) 216, 237, 267, 378, 396
Hin1II CATG 7 cut(s) 154, 163, 355, 418, 427, 486, 911
Hin6I GCGC 4 cut(s) 5, 267, 720, 941
HinP1I GCGC 4 cut(s) 5, 267, 720, 941
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 4 cut(s) 489, 547, 577, 733
HpaII CCGG 3 cut(s) 112, 656, 975
HphI GGTGA 3 cut(s) 34, 70, 139
Hpy166II GTNNAC 4 cut(s) 91, 214, 241, 367
Hpy188I TCNGA 3 cut(s) 13, 546, 582
Hpy188III TCNNGA 4 cut(s) 61, 334, 403, 694
Hpy8I GTNNAC 4 cut(s) 91, 214, 241, 367
Hpy99I CGWCG 7 cut(s) 215, 218, 239, 257, 362, 383, 443
HpyAV CCTTC 7 cut(s) 22, 85, 175, 337, 394, 409, 998
HpyCH4III ACNGT 4 cut(s) 82, 609, 717, 847
HpyCH4IV ACGT 2 cut(s) 51, 237
HpyCH4V TGCA 4 cut(s) 499, 605, 818, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
HpyF3I CTNAG 2 cut(s) 561, 1029
HpySE526I ACGT 2 cut(s) 51, 237
Hsp92I GRCGYC 5 cut(s) 216, 237, 267, 378, 396
Hsp92II CATG 7 cut(s) 154, 163, 355, 418, 427, 486, 911
HspAI GCGC 4 cut(s) 5, 267, 720, 941
KasI GGCGCC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 3 cut(s) 63, 153, 834
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 3 cut(s) 467, 511, 639
LweI GCATC 2 cut(s) 327, 928
MaeII ACGT 2 cut(s) 51, 237
MaeIII GTNAC 2 cut(s) 490, 847
MalI GATC 3 cut(s) 65, 155, 836
MboI GATC 3 cut(s) 63, 153, 834
MboII GAAGA 4 cut(s) 37, 58, 304, 1030
MflI RGATCY 1 cut(s) 63
MluCI AATT 4 cut(s) 473, 709, 859, 914
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 2 cut(s) 321, 966
MseI TTAA 2 cut(s) 555, 927
MslI CAYNNNNRTG 2 cut(s) 335, 823
MspA1I CMGCKG 1 cut(s) 502
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 3 cut(s) 112, 656, 975
Mva1269I GAATGC 1 cut(s) 182
MvnI CGCG 4 cut(s) 198, 234, 362, 722
MwoI GCNNNNNNNGC 5 cut(s) 204, 275, 455, 521, 938
NarI GGCGCC 1 cut(s) 267
NdeII GATC 3 cut(s) 63, 153, 834
NlaIII CATG 7 cut(s) 154, 163, 355, 418, 427, 486, 911
NlaIV GGNNCC 2 cut(s) 268, 872
NmuCI GTSAC 2 cut(s) 490, 847
NsbI TGCGCA 1 cut(s) 942
PaeR7I CTCGAG 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 547, 577, 733
Pfl23II CGTACG 1 cut(s) 459
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 457, 501, 654, 934
PleI GAGTC 1 cut(s) 497
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 788
PspLI CGTACG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 268, 872
PspPI GGNCC 2 cut(s) 31, 346
PspPPI RGGWCCY 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 673
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 5 cut(s) 101, 122, 461, 872, 899
RsaNI GTAC 5 cut(s) 100, 121, 460, 871, 898
RseI CAYNNNNRTG 2 cut(s) 335, 823
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 555, 927
SatI GCNGC 4 cut(s) 456, 500, 653, 933
Sau3AI GATC 3 cut(s) 63, 153, 834
Sau96I GGNCC 2 cut(s) 31, 346
SchI GAGTC 1 cut(s) 498
SfaNI GCATC 2 cut(s) 327, 928
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 673
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 673
SmiMI CAYNNNNRTG 2 cut(s) 335, 823
SmlI CTYRAG 4 cut(s) 245, 341, 673, 926
SmoI CTYRAG 4 cut(s) 245, 341, 673, 926
Sse9I AATT 4 cut(s) 473, 709, 859, 914
SsiI CCGC 8 cut(s) 196, 205, 232, 303, 362, 740, 888, 932
SspDI GGCGCC 1 cut(s) 266
TaaI ACNGT 4 cut(s) 82, 609, 717, 847
TaiI ACGT 2 cut(s) 54, 240
TaqI TCGA 4 cut(s) 108, 213, 519, 674
TasI AATT 4 cut(s) 473, 709, 859, 914
TatI WGTACW 2 cut(s) 99, 120
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 3 cut(s) 547, 577, 733
Tru1I TTAA 2 cut(s) 555, 927
Tru9I TTAA 2 cut(s) 555, 927
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 2 cut(s) 490, 847
TseI GCWGC 3 cut(s) 455, 499, 652
Tsp45I GTSAC 2 cut(s) 490, 847
TspDTI ATGAA 3 cut(s) 30, 319, 794
TspGWI ACGGA 6 cut(s) 46, 241, 310, 427, 1014, 1026
TspRI CASTG 1 cut(s) 720
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 473, 709
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 421
XhoI CTCGAG 1 cut(s) 673
XmiI GTMKAC 4 cut(s) 90, 213, 240, 366
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.