FvH4_1g03360

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001025
Physical Location & Seq
Forward (+)
1860107 .. 1862179
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03360.t1

Sequence Viewer

Length: 1032 bp
ATGGCGCTCTCCGACGGTGTGGTGAAGAAGGTCCTCATCTCCTACGCCTACGTCGCCATCTGGATCTTCCTCAGCTTCACCGTCATCGTTTACAACAAGTACATCCTCGACCGCAAGCTCTACAACTGGCCCTTCCCGATCTCCCTCACCATGATCCACATGGCCTTCTGCTCCTCCCTTGCCTACCTCCTCGTCAAGGTCTTCAAGCTCGTCGAGCCAGTCTCCATGTCACGTGACCTCTACCTGAAATCCGTCGTCCCCATCGGAGCTCTCTACGCGCTCTCGCTCTGGTTCTCCAACTCTGCATACATTTTCCTCTCGGTCTCCTTCATCCAGATGCTCAAGGCTCTCATGCCGGTCGCCGTGTACTCGATCGGAATCCTAATCAAGAAAGATCCGTTCAAATCGGACACCATGGTCAACATGCTCTCGATCTCCTTCGGCGTTGCGATTGCCGCTTACGGCGAGGCCAAGTTCAACTCGTGGGGAGTCAGTTTGCAGCTTCTTGCGGTCGTTTTCGAGGCCACGAGGTTGGTCCTGATCCAGATCTTGCTCAATGCCAAAGGGATCAGCTTGAATCCGATCACTTCTCTGTACTACGTTGCGCCGTGCTGCTTTCTGTTTCTGTGCATCCCTTGGATCGTTGTGGAGTTTCCGGTTTTGAAGGAGACTTCTAGCTTTCATTTCGATTTCGTGATTTTCGGCACGAATTCGCTGTGTGCTTTCGCGCTGAATTTGGCTGTGTTTCTGCTGGTGGGGAAGACCTCGGCTTTGACTATGAATGTGGCTGGTGTTGTGAAGGATTGGCTGTTGATTGCGTTTTCGTGGTCGGTGATTAAGGATACAGTGACGCCGATTAACTTGATTGGGTATCTGATTGCGTTTTTCGGGGTGGCGTATTACAATCATGCGAAATTGCAGGCGCTTAAGGCTGCCGAGGCGCAGAAGAAGGCCCAGCAGGACAATGTGGAGGCTGGGAAGCTGTTGGAGGAGAGAGATGAGGATGGGAAGAAGAGCGAAACTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

344

Amino Acids

38.26

Weight (kDa)

8.76

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 16 - 302 1.6e-23 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AccII CGCG 2 cut(s) 278, 728
AciI CCGC 3 cut(s) 112, 456, 509
AclWI GGATC 6 cut(s) 71, 148, 389, 535, 575, 647
AcsI RAATTY 2 cut(s) 709, 733
AcvI CACGTG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 851
AfaI GTAC 3 cut(s) 101, 368, 596
AfiI CCNNNNNNNGG 1 cut(s) 196
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 5 cut(s) 205, 403, 478, 577, 664
AluBI AGCT 8 cut(s) 75, 118, 208, 269, 502, 573, 678, 982
AluI AGCT 8 cut(s) 75, 118, 208, 269, 502, 573, 678, 982
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 226, 328, 662
AlwI GGATC 6 cut(s) 71, 148, 389, 535, 575, 647
AoxI GGCC 5 cut(s) 128, 162, 468, 522, 951
ApeKI GCWGC 3 cut(s) 499, 612, 932
ApoI RAATTY 2 cut(s) 709, 733
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AspLEI GCGC 6 cut(s) 7, 280, 607, 730, 925, 943
AspS9I GGNCC 4 cut(s) 31, 129, 535, 952
AsuHPI GGTGA 4 cut(s) 34, 70, 139, 844
AvaII GGWCC 2 cut(s) 31, 535
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 2 cut(s) 481, 526
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 193, 767
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 511, 599, 919
BccI CCATC 3 cut(s) 65, 269, 998
BceAI ACGGC 3 cut(s) 347, 478, 592
BciVI GTATCC 1 cut(s) 835
BcoDI GTCTC 3 cut(s) 226, 328, 662
BfaI CTAG 1 cut(s) 675
BfoI RGCGCY 2 cut(s) 8, 926
BfrI CTTAAG 1 cut(s) 926
BfuI GTATCC 1 cut(s) 835
BglII AGATCT 1 cut(s) 546
BisI GCNGC 4 cut(s) 456, 500, 613, 933
BlsI GCNGC 4 cut(s) 457, 501, 614, 934
Bme18I GGWCC 2 cut(s) 31, 535
BmgT120I GGNCC 4 cut(s) 31, 129, 535, 952
BmsI GCATC 2 cut(s) 327, 639
BpiI GAAGAC 2 cut(s) 193, 767
BplI GAGNNNNNCTC 3 cut(s) 206, 238, 1006
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 233
BsaBI GATNNNNATC 2 cut(s) 377, 545
BsaHI GRCGYC 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 4 cut(s) 414, 635, 765, 936
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 131, 218
Bse8I GATNNNNATC 2 cut(s) 377, 545
BseDI CCNNGG 4 cut(s) 414, 635, 765, 936
BseGI GGATG 4 cut(s) 102, 330, 630, 1009
BseJI GATNNNNATC 2 cut(s) 377, 545
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 131, 218
BseRI GAGGAG 3 cut(s) 163, 179, 1004
BseXI GCAGC 3 cut(s) 511, 599, 919
BseYI CCCAGC 2 cut(s) 954, 974
Bsh1236I CGCG 2 cut(s) 278, 728
Bsh1285I CGRYCG 4 cut(s) 112, 360, 375, 513
BshFI GGCC 5 cut(s) 130, 164, 470, 524, 953
BsiEI CGRYCG 4 cut(s) 112, 360, 375, 513
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 356, 656
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 3 cut(s) 226, 328, 662
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 5 cut(s) 130, 164, 470, 524, 953
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 3 cut(s) 112, 456, 509
BspANI GGCC 5 cut(s) 130, 164, 470, 524, 953
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 278, 728
BspPI GGATC 6 cut(s) 71, 148, 389, 535, 575, 647
BspQI GCTCTTC 1 cut(s) 1007
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 131, 218
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 4 cut(s) 414, 635, 765, 936
BssNI GRCGYC 1 cut(s) 851
BssSI CACGAG 2 cut(s) 481, 526
BssT1I CCWWGG 2 cut(s) 414, 635
Bst2BI CACGAG 2 cut(s) 481, 526
Bst4CI ACNGT 3 cut(s) 17, 82, 847
Bst6I CTCTTC 1 cut(s) 1007
BstACI GRCGYC 1 cut(s) 851
BstAFI CTTAAG 1 cut(s) 926
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 116, 921
BstDEI CTNAG 2 cut(s) 71, 1023
BstDSI CCRYGG 1 cut(s) 414
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 4 cut(s) 102, 330, 630, 1009
BstFNI CGCG 2 cut(s) 278, 728
BstH2I RGCGCY 2 cut(s) 8, 926
BstHHI GCGC 6 cut(s) 7, 280, 607, 730, 925, 943
BstMAI GTCTC 3 cut(s) 226, 328, 662
BstMCI CGRYCG 4 cut(s) 112, 360, 375, 513
BstMWI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
BstNSI RCATGY 1 cut(s) 427
BstUI CGCG 2 cut(s) 278, 728
BstV1I GCAGC 3 cut(s) 511, 599, 919
BstV2I GAAGAC 2 cut(s) 193, 767
BstX2I RGATCY 3 cut(s) 63, 394, 546
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 3 cut(s) 63, 394, 546
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 5 cut(s) 130, 164, 470, 524, 953
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 4 cut(s) 102, 330, 630, 1009
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 2 cut(s) 116, 921
CfoI GCGC 6 cut(s) 7, 280, 607, 730, 925, 943
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 4 cut(s) 31, 129, 535, 952
CseI GACGC 1 cut(s) 859
Csp6I GTAC 3 cut(s) 100, 367, 595
CviAII CATG 7 cut(s) 151, 160, 226, 352, 415, 424, 908
CviQI GTAC 3 cut(s) 100, 367, 595
DdeI CTNAG 2 cut(s) 71, 1023
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 414, 635
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 31, 535
Eco53kI GAGCTC 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 709
EcoT14I CCWWGG 2 cut(s) 414, 635
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 2 cut(s) 414, 635
FaeI CATG 7 cut(s) 154, 163, 229, 355, 418, 427, 911
FaiI YATR 9 cut(s) 152, 161, 227, 307, 353, 416, 425, 779, 909
FaqI GGGAC 1 cut(s) 242
FatI CATG 7 cut(s) 150, 159, 225, 351, 414, 423, 907
Fnu4HI GCNGC 4 cut(s) 456, 500, 613, 933
FokI GGATG 4 cut(s) 89, 317, 617, 1016
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 4 cut(s) 456, 500, 613, 933
FspBI CTAG 1 cut(s) 675
GlaI GCGC 6 cut(s) 6, 279, 606, 729, 924, 942
GluI GCNGC 4 cut(s) 456, 500, 613, 933
GsaI CCCAGC 2 cut(s) 958, 978
HaeII RGCGCY 2 cut(s) 8, 926
HaeIII GGCC 5 cut(s) 130, 164, 470, 524, 953
HapII CCGG 2 cut(s) 356, 656
HgaI GACGC 1 cut(s) 859
HhaI GCGC 6 cut(s) 7, 280, 607, 730, 925, 943
Hin1I GRCGYC 1 cut(s) 851
Hin1II CATG 7 cut(s) 154, 163, 229, 355, 418, 427, 911
Hin6I GCGC 6 cut(s) 5, 278, 605, 728, 923, 941
HinP1I GCGC 6 cut(s) 5, 278, 605, 728, 923, 941
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 378, 489, 577
HpaII CCGG 2 cut(s) 356, 656
HphI GGTGA 4 cut(s) 34, 70, 139, 844
Hpy166II GTNNAC 3 cut(s) 91, 367, 421
Hpy188I TCNGA 6 cut(s) 13, 266, 377, 409, 582, 876
Hpy188III TCNNGA 9 cut(s) 61, 136, 334, 388, 430, 538, 544, 694, 1025
Hpy8I GTNNAC 3 cut(s) 91, 367, 421
Hpy99I CGWCG 4 cut(s) 17, 56, 215, 257
HpyAV CCTTC 8 cut(s) 22, 142, 175, 337, 448, 658, 793, 943
HpyCH4III ACNGT 3 cut(s) 17, 82, 847
HpyCH4IV ACGT 3 cut(s) 51, 232, 600
HpyCH4V TGCA 4 cut(s) 305, 499, 630, 919
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
HpyF3I CTNAG 2 cut(s) 71, 1023
HpySE526I ACGT 3 cut(s) 51, 232, 600
Hsp92I GRCGYC 1 cut(s) 851
Hsp92II CATG 7 cut(s) 154, 163, 229, 355, 418, 427, 911
HspAI GCGC 6 cut(s) 5, 278, 605, 728, 923, 941
LguI GCTCTTC 1 cut(s) 1007
LmnI GCTCC 2 cut(s) 176, 266
Lsp1109I GCAGC 3 cut(s) 511, 599, 919
LweI GCATC 2 cut(s) 327, 639
MaeI CTAG 1 cut(s) 675
MaeII ACGT 3 cut(s) 51, 232, 600
MaeIII GTNAC 3 cut(s) 228, 233, 847
MboII GAAGA 7 cut(s) 37, 58, 193, 772, 958, 1021, 1024
MflI RGATCY 3 cut(s) 63, 394, 546
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 709, 733, 914
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 3 cut(s) 36, 321, 966
MseI TTAA 3 cut(s) 837, 858, 927
MslI CAYNNNNRTG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 2 cut(s) 356, 656
MvnI CGCG 2 cut(s) 278, 728
MwoI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
NcoI CCATGG 1 cut(s) 414
NlaIII CATG 7 cut(s) 154, 163, 229, 355, 418, 427, 911
NmeAIII GCCGAG 2 cut(s) 746, 961
NmuCI GTSAC 3 cut(s) 228, 233, 847
NspI RCATGY 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 1007
PfeI GAWTC 2 cut(s) 378, 577
PkrI GCNGC 4 cut(s) 457, 501, 614, 934
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 1 cut(s) 497
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 497
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 31
PspCI CACGTG 1 cut(s) 233
PspFI CCCAGC 2 cut(s) 954, 974
PspPI GGNCC 4 cut(s) 31, 129, 535, 952
PspPPI RGGWCCY 1 cut(s) 31
PsuI RGATCY 3 cut(s) 63, 394, 546
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 3 cut(s) 101, 368, 596
RsaNI GTAC 3 cut(s) 100, 367, 595
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 1007
SaqAI TTAA 3 cut(s) 837, 858, 927
SatI GCNGC 4 cut(s) 456, 500, 613, 933
Sau96I GGNCC 4 cut(s) 31, 129, 535, 952
SchI GAGTC 1 cut(s) 498
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 327, 639
SinI GGWCC 2 cut(s) 31, 535
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 341, 926
SmoI CTYRAG 2 cut(s) 341, 926
Sse9I AATT 3 cut(s) 709, 733, 914
SsiI CCGC 3 cut(s) 112, 456, 509
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 271
StyI CCWWGG 2 cut(s) 414, 635
TaaI ACNGT 3 cut(s) 17, 82, 847
TaiI ACGT 3 cut(s) 54, 235, 603
TaqI TCGA 6 cut(s) 108, 213, 371, 431, 519, 687
TaqII GACCGA 1 cut(s) 310
TasI AATT 3 cut(s) 709, 733, 914
TatI WGTACW 3 cut(s) 99, 366, 594
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 2 cut(s) 378, 577
Tru1I TTAA 3 cut(s) 837, 858, 927
Tru9I TTAA 3 cut(s) 837, 858, 927
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 3 cut(s) 228, 233, 847
TseI GCWGC 3 cut(s) 499, 612, 932
Tsp45I GTSAC 3 cut(s) 228, 233, 847
TspDTI ATGAA 3 cut(s) 319, 671, 794
TspGWI ACGGA 2 cut(s) 241, 387
TspRI CASTG 1 cut(s) 852
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 31, 535
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 2 cut(s) 709, 733
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.