Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

8823176 .. 8824639

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGTAAAGGTGGATCACTAAGCGAAGGCGTGATTAAGAACATAATCATCTCCTACACATACGTAGCAATATGGATCTTCCTAAGCTTCACCGTCATCGTCTACAACAAATATATCCTCGACAAGAAGATGTACGATTGGCCATTCCCGATCTCACTCACAATGATCCACATGTCCTTTTGCTCAACCCTAGCTTTTCTTCTCATCAAGGTCTTCAAATTTGTCGAACCGGTCTCAATGTCACGTGACACTTATCTCAGATCCGTCGTCCCGATCGGAGCCTTGTATTCACTCTCTCTTTGGCTCTCTAACTCAGCCTACATTTACCTCTCGGTCTCCTTCATTCAGATGCTCAAAGCGTTAATGCCAGTCGCCGTTTATTCAATTGGCGTGCTCTTCAAGAAAGAGGGTTTCAAATCTGAGACGATGATGAACATGCTTTCGATCTCATTTGGTGTAGCCATTGCTGCTTATGGCGAAGCTAGATTCGATGTTTGGGGTGTGATTCTCCAGCTTGGTGCTGTTGCTTTCGAGGCGACTCGTTTGGTAATGATTCAGATCTTGCTTACTTCTAAAGGAATCACTTTGAATCCTATCACTTCTCTTTATTACGTTGCTCCTTGCTGCTTAGCTTTCTTGTTTATCCCTTGGATTGTCGTGGAGTTTCCGATCTTGAGAGATACCTCTAGCTTCCATTTCGATTACCTCATTTTCGGGACGAATTCGTTCTGTGCATTTGCTCTGAATCTTGCTGTGTTTCTTTTGGTTGGGAAAACCTCTGCTTTGACCATGAATGTTGCTGGTGTGGTTAAGGACTGGCTCTTGATCGCCTTTTCGTGGTCGGTCATTAAGGACACAGTGACTCCTATTAATCTTTTTGGTTATGGGATTGCTTTCTTGGGAGTTGCGTATTATAATCACGCGAAGCTACAAGCATTGAAGGCTAAAGAAGCTCAGAAGACTGCTCAGCAAGTTGATGAAGAGACTGGTCGGCTTTTGGAAGAGAGGGAAGGAAATGAAGGTGGGAGGAAGAATGAGCCAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

349

Amino Acids

39.05

Weight (kDa)

8.18

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	2.5e-22	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	923
AclWI	GGATC	4 cut(s)	22, 83, 160, 255
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	218, 721
AcvI	CACGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	837
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	217, 384, 400, 415, 589, 940
AluBI	AGCT	8 cut(s)	87, 194, 482, 514, 632, 690, 928, 953
AluI	AGCT	8 cut(s)	87, 194, 482, 514, 632, 690, 928, 953
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	4 cut(s)	238, 340, 416, 977
AlwI	GGATC	4 cut(s)	22, 83, 160, 255
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	467, 624
ApoI	RAATTY	2 cut(s)	218, 721
AseI	ATTAAT	1 cut(s)	870
AsiGI	ACCGGT	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	725
AsuHPI	GGTGA	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	142
BbrPI	CACGTG	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	205, 965
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	454, 611
BceAI	ACGGC	1 cut(s)	359
BcoDI	GTCTC	4 cut(s)	238, 340, 416, 977
BfaI	CTAG	3 cut(s)	191, 483, 687
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	2 cut(s)	468, 625
BlpI	GCTNAGC	2 cut(s)	628, 966
BlsI	GCNGC	2 cut(s)	469, 626
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	205, 965
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu1102I	GCTNAGC	2 cut(s)	628, 966
BpuEI	CTTGAG	1 cut(s)	694
BsaAI	YACGTR	2 cut(s)	64, 245
BsaBI	GATNNNNATC	1 cut(s)	557
BsaI	GGTCTC	2 cut(s)	238, 340
BsaJI	CCNNGG	1 cut(s)	647
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	368, 821, 991
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	647
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	5 cut(s)	271, 327, 411, 968, 980
BseNI	ACTGG	3 cut(s)	368, 821, 991
BseXI	GCAGC	2 cut(s)	454, 611
Bsh1236I	CGCG	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	254, 730
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	4 cut(s)	238, 340, 416, 977
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	254, 730
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	2 cut(s)	238, 340
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp1720I	GCTNAGC	2 cut(s)	628, 966
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	5 cut(s)	270, 326, 412, 967, 979
BspFNI	CGCG	1 cut(s)	923
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	4 cut(s)	22, 83, 160, 255
BspQI	GCTCTTC	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	238, 340
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	368, 821, 991
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	3 cut(s)	401, 975, 996
BstBAI	YACGTR	2 cut(s)	64, 245
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	8 cut(s)	20, 83, 257, 313, 420, 628, 954, 966
BstFNI	CGCG	1 cut(s)	923
BstMAI	GTCTC	4 cut(s)	238, 340, 416, 977
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
BstNSI	RCATGY	2 cut(s)	175, 439
BstSNI	TACGTA	1 cut(s)	64
BstUI	CGCG	1 cut(s)	923
BstV1I	GCAGC	2 cut(s)	454, 611
BstV2I	GAAGAC	2 cut(s)	205, 965
BstX2I	RGATCY	3 cut(s)	75, 260, 558
BstYI	RGATCY	3 cut(s)	75, 260, 558
BsuRI	GGCC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	3 cut(s)	172, 436, 790
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	8 cut(s)	20, 83, 257, 313, 420, 628, 954, 966
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	3 cut(s)	401, 975, 996
EarI	CTCTTC	3 cut(s)	401, 975, 996
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	647
Eco31I	GGTCTC	2 cut(s)	238, 340
Eco72I	CACGTG	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	3 cut(s)	175, 439, 793
FaqI	GGGAC	2 cut(s)	254, 730
FatI	CATG	3 cut(s)	171, 435, 789
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	468, 625
Fsp4HI	GCNGC	2 cut(s)	468, 625
FspBI	CTAG	3 cut(s)	191, 483, 687
GluI	GCNGC	2 cut(s)	468, 625
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	3 cut(s)	175, 439, 793
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	8 cut(s)	486, 505, 538, 553, 579, 589, 745, 862
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	8 cut(s)	260, 278, 348, 421, 558, 669, 744, 957
Hpy188III	TCNNGA	6 cut(s)	148, 271, 400, 673, 715, 823
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	20, 349, 934, 1004, 1013
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	3 cut(s)	63, 244, 612
HpyCH4V	TGCA	1 cut(s)	734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
HpyF3I	CTNAG	8 cut(s)	20, 83, 257, 313, 420, 628, 954, 966
HpySE526I	ACGT	3 cut(s)	63, 244, 612
Hsp92II	CATG	3 cut(s)	175, 439, 793
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	278, 622
LpnPI	CCDG	6 cut(s)	243, 381, 524, 786, 802, 972
Lsp1109I	GCAGC	2 cut(s)	454, 611
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	191, 483, 687
MaeII	ACGT	3 cut(s)	63, 244, 612
MaeIII	GTNAC	3 cut(s)	240, 245, 859
MboII	GAAGA	9 cut(s)	70, 139, 191, 205, 388, 970, 992, 1013, 1042
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	3 cut(s)	75, 260, 558
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	3 cut(s)	218, 384, 721
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	532, 856
Mox20I	TGGCCA	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	6 cut(s)	36, 362, 810, 849, 870, 1048
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	923
MwoI	GCNNNNNNNGC	4 cut(s)	467, 533, 941, 950
NlaIII	CATG	3 cut(s)	175, 439, 793
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	3 cut(s)	240, 245, 859
NspI	RCATGY	2 cut(s)	175, 439
PciI	ACATGT	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	6 cut(s)	486, 505, 553, 579, 589, 745
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	469, 626
Ple19I	CGATCG	1 cut(s)	276
PleI	GAGTC	2 cut(s)	532, 856
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
PpsI	GAGTC	2 cut(s)	532, 856
Ppu21I	YACGTR	2 cut(s)	64, 245
PscI	ACATGT	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	915
PspCI	CACGTG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	280
PsuI	RGATCY	3 cut(s)	75, 260, 558
PvuI	CGATCG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	6 cut(s)	36, 362, 810, 849, 870, 1048
SatI	GCNGC	2 cut(s)	468, 625
SchI	GAGTC	2 cut(s)	532, 856
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	3 cut(s)	218, 384, 721
SspMI	CTAG	3 cut(s)	191, 483, 687
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	3 cut(s)	66, 247, 615
TaqI	TCGA	6 cut(s)	120, 225, 443, 489, 531, 699
TaqII	GACCGA	2 cut(s)	322, 832
TasI	AATT	3 cut(s)	218, 384, 721
TfiI	GAWTC	6 cut(s)	486, 505, 553, 579, 589, 745
Tru1I	TTAA	6 cut(s)	36, 362, 810, 849, 870, 1048
Tru9I	TTAA	6 cut(s)	36, 362, 810, 849, 870, 1048
TscAI	CASTG	1 cut(s)	864
TseFI	GTSAC	3 cut(s)	240, 245, 859
TseI	GCWGC	2 cut(s)	467, 624
Tsp45I	GTSAC	3 cut(s)	240, 245, 859
TspDTI	ATGAA	5 cut(s)	331, 446, 806, 993, 1032
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	864
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	2 cut(s)	218, 721
XceI	RCATGY	2 cut(s)	175, 439
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	3 cut(s)	191, 483, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.