Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

40074069 .. 40075994

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGCAAAGGTGGCTCTCTCAGCGAAGGCGTCATCAGAAAGATCCTCCTTTCCTACACCTATGTCGCGATTTGGATCTTCCTCAGCTTCACCGTCATCGTCTACAACAAATACATCCTCGACAAGAAGATGTACAACTGGCCGTTCCCAATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCTCCCTCGCCTTCGTCCTCGTCCGCGTCTTCAAGCTCGTCGAGCCTGTCACCATGTCCAGAGATCTCTACATCTCTTCCGTGGTACCCATTGGAGCTCTCTACTCTCTCTCCCTCTGGCTCTCCAATTCTGCTTACATCTATCTCTCTGTGTCATTTATTCAAATGCTTAAGGCGCTCATGCCTGTGGCCGTTTACTCAATTGGGGTTTCGTTAAAAAAAGAGAGCTTTAAGACTGATACCATGGTGAACATGGTCTCGATCTCAATTGGGGTCGCCATTGCTGCTTATGGGGAGGCTCGATTTGACACCTGGGGTGTGATTCTGCAGCTGGGTGCTGTTGCTTTTGAGGCCACAAGGCTTGTCCTGATCCAAATCTTGCTCACATCTAAAGGCATCACCTTGAACCCAATTACCTCTTTGTATTATGTTGCTCCTTGTTGCTTGGCTTTTTTGTTTGTGCCTTGGATCTTTGTTGAGTACCCAATTTTGAGGGACTCTTCCAGCTTCCATTTTGATTTCCTGATCTTTGGGACCAATTCTCTCTGTGCATTTGCTTTGAATCTGGCTGTTTTCTTGCTTGTTGGAAAGACCTCTGCTTTGACCATGAATGTGGCTGGTGTGGTGAAAGATTGGCTTTTGATTGCTTTCTCTTGGTCTGTCATTAAGGACACTGTGACCCCAATCAACTTGTTTGGTTATGGCCTTGCATTTTTGGGTGTTGCCTATTACAACCACTCCAAATTGCAGGCTCTTAAGGCCAAGGAGGCGCAGAAGAAGACGGCACTGGCCGATGAGGAGGCCAATAGGCTTTTGGAGGACAGGGAAGGTGAAGGAATTGGGAAGAGGAACGAATCCCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

38.82

Weight (kDa)

8.96

Isoelectric Point (pI)

25.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	2 cut(s)	68, 210
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	5 cut(s)	37, 83, 160, 547, 659
AcoI	YGGCCR	3 cut(s)	140, 372, 972
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	3 cut(s)	134, 270, 665
AflII	CTTAAG	2 cut(s)	353, 938
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	217, 347, 589, 745
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	6 cut(s)	87, 220, 281, 411, 514, 690
AluI	AGCT	6 cut(s)	87, 220, 281, 411, 514, 690
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	5 cut(s)	37, 83, 160, 547, 659
AoxI	GGCC	7 cut(s)	140, 372, 534, 886, 942, 972, 984
ApeKI	GCWGC	2 cut(s)	467, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	185, 361, 955
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	7 cut(s)	82, 151, 226, 442, 574, 820, 1025
AvaII	GGWCC	1 cut(s)	717
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	205, 968
Bbv12I	GWGCWC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	454, 523
BceAI	ACGGC	3 cut(s)	127, 359, 981
BciT130I	CCWGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	362
BfrI	CTTAAG	2 cut(s)	353, 938
BglI	GCCNNNNNGGC	1 cut(s)	950
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	2 cut(s)	468, 512
BlsI	GCNGC	2 cut(s)	469, 513
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	2 cut(s)	270, 718
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	588
BpiI	GAAGAC	2 cut(s)	205, 968
Bpu10I	CCTNAGC	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	74, 557
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	5 cut(s)	264, 426, 495, 647, 945
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 905, 935
Bse1I	ACTGG	2 cut(s)	143, 975
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	2 cut(s)	74, 557
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	5 cut(s)	264, 426, 495, 647, 945
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	2 cut(s)	74, 557
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	34, 97
BseNI	ACTGG	2 cut(s)	143, 975
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	454, 523
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	2 cut(s)	68, 210
BshFI	GGCC	7 cut(s)	142, 374, 536, 888, 944, 974, 986
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	692, 730
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	692, 730
BsnI	GGCC	7 cut(s)	142, 374, 536, 888, 944, 974, 986
Bso31I	GGTCTC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
Bsp19I	CCATGG	1 cut(s)	426
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	7 cut(s)	142, 374, 536, 888, 944, 974, 986
BspCNI	CTCAG	2 cut(s)	33, 96
BspFNI	CGCG	2 cut(s)	68, 210
BspLI	GGNNCC	2 cut(s)	270, 718
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	5 cut(s)	37, 83, 160, 547, 659
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	2 cut(s)	353, 938
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	143, 975
BssECI	CCNNGG	5 cut(s)	264, 426, 495, 647, 945
BssMI	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	3 cut(s)	426, 647, 945
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	3 cut(s)	265, 688, 1022
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	2 cut(s)	353, 938
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	933
BstDEI	CTNAG	2 cut(s)	20, 83
BstDSI	CCRYGG	2 cut(s)	264, 426
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	2 cut(s)	68, 210
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	3 cut(s)	185, 361, 955
BstKTI	GATC	8 cut(s)	45, 78, 168, 250, 447, 555, 654, 711
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
BstMWI	GCNNNNNNNGC	9 cut(s)	12, 21, 191, 226, 358, 467, 533, 941, 950
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	2 cut(s)	68, 210
BstV1I	GCAGC	2 cut(s)	454, 523
BstV2I	GAAGAC	2 cut(s)	205, 968
BstX2I	RGATCY	4 cut(s)	42, 75, 247, 651
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	4 cut(s)	42, 75, 247, 651
BsuRI	GGCC	7 cut(s)	142, 374, 536, 888, 944, 974, 986
BtgI	CCRYGG	2 cut(s)	264, 426
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	855, 968
BtuMI	TCGCGA	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	933
CfoI	GCGC	3 cut(s)	185, 361, 955
Cfr13I	GGNCC	1 cut(s)	717
CseI	GACGC	2 cut(s)	19, 199
Csp6I	GTAC	3 cut(s)	133, 269, 664
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	7 cut(s)	163, 172, 238, 364, 427, 436, 790
CviQI	GTAC	3 cut(s)	133, 269, 664
DdeI	CTNAG	2 cut(s)	20, 83
DpnI	GATC	8 cut(s)	44, 77, 167, 249, 446, 554, 653, 710
DpnII	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
EaeI	YGGCCR	3 cut(s)	140, 372, 972
Eam1104I	CTCTTC	3 cut(s)	265, 688, 1022
EarI	CTCTTC	3 cut(s)	265, 688, 1022
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	3 cut(s)	426, 647, 945
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	3 cut(s)	426, 647, 945
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	3 cut(s)	426, 647, 945
FaeI	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 793
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	2 cut(s)	692, 730
FatI	CATG	7 cut(s)	162, 171, 237, 363, 426, 435, 789
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	468, 512
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	468, 512
GlaI	GCGC	3 cut(s)	184, 360, 954
GluI	GCNGC	2 cut(s)	468, 512
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	7 cut(s)	142, 374, 536, 888, 944, 974, 986
HgaI	GACGC	2 cut(s)	19, 199
HhaI	GCGC	3 cut(s)	185, 361, 955
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 793
Hin6I	GCGC	3 cut(s)	183, 359, 953
HinP1I	GCGC	3 cut(s)	183, 359, 953
HinfI	GANTC	4 cut(s)	505, 680, 745, 1037
HphI	GGTGA	7 cut(s)	82, 151, 226, 442, 574, 820, 1025
Hpy166II	GTNNAC	3 cut(s)	103, 379, 433
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	5 cut(s)	67, 243, 442, 550, 706
Hpy8I	GTNNAC	3 cut(s)	103, 379, 433
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	20, 187, 205, 1004, 1010
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4V	TGCA	4 cut(s)	511, 734, 893, 931
HpyF10VI	GCNNNNNNNGC	9 cut(s)	12, 21, 191, 226, 358, 467, 533, 941, 950
HpyF3I	CTNAG	2 cut(s)	20, 83
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 793
HspAI	GCGC	3 cut(s)	183, 359, 953
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
LmnI	GCTCC	2 cut(s)	278, 622
Lsp1109I	GCAGC	2 cut(s)	454, 523
LweI	GCATC	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	232, 859
MalI	GATC	8 cut(s)	44, 77, 167, 249, 446, 554, 653, 710
MboI	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
MboII	GAAGA	8 cut(s)	70, 139, 205, 252, 675, 970, 973, 1039
MfeI	CAATTG	2 cut(s)	384, 450
MflI	RGATCY	4 cut(s)	42, 75, 247, 651
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	9 cut(s)	310, 384, 450, 594, 669, 721, 926, 1020, 1045
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	748
MseI	TTAA	5 cut(s)	354, 398, 414, 849, 939
MslI	CAYNNNNRTG	2 cut(s)	368, 794
MspA1I	CMGCKG	1 cut(s)	514
MspCI	CTTAAG	2 cut(s)	353, 938
MspR9I	CCNGG	1 cut(s)	496
MunI	CAATTG	2 cut(s)	384, 450
MvaI	CCWGG	1 cut(s)	496
MvnI	CGCG	2 cut(s)	68, 210
MwoI	GCNNNNNNNGC	9 cut(s)	12, 21, 191, 226, 358, 467, 533, 941, 950
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
NlaIII	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 793
NlaIV	GGNNCC	2 cut(s)	270, 718
NmuCI	GTSAC	2 cut(s)	232, 859
NruI	TCGCGA	1 cut(s)	68
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	505, 745, 1037
PkrI	GCNGC	2 cut(s)	469, 513
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PscI	ACATGT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	270, 718
PspPI	GGNCC	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	4 cut(s)	42, 75, 247, 651
PvuII	CAGCTG	1 cut(s)	514
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	3 cut(s)	134, 270, 665
RsaNI	GTAC	3 cut(s)	133, 269, 664
RseI	CAYNNNNRTG	2 cut(s)	368, 794
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	5 cut(s)	354, 398, 414, 849, 939
SatI	GCNGC	2 cut(s)	468, 512
Sau3AI	GATC	8 cut(s)	42, 75, 165, 247, 444, 552, 651, 708
Sau96I	GGNCC	1 cut(s)	717
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	717
SmiMI	CAYNNNNRTG	2 cut(s)	368, 794
SmlI	CTYRAG	2 cut(s)	353, 938
SmoI	CTYRAG	2 cut(s)	353, 938
Sse9I	AATT	9 cut(s)	310, 384, 450, 594, 669, 721, 926, 1020, 1045
SsiI	CCGC	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	3 cut(s)	426, 647, 945
TaaI	ACNGT	2 cut(s)	94, 859
TaqI	TCGA	4 cut(s)	120, 225, 443, 484
TasI	AATT	9 cut(s)	310, 384, 450, 594, 669, 721, 926, 1020, 1045
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	505, 745, 1037
Tru1I	TTAA	5 cut(s)	354, 398, 414, 849, 939
Tru9I	TTAA	5 cut(s)	354, 398, 414, 849, 939
TscAI	CASTG	2 cut(s)	862, 975
TseFI	GTSAC	2 cut(s)	232, 859
TseI	GCWGC	2 cut(s)	467, 511
Tsp45I	GTSAC	2 cut(s)	232, 859
TspDTI	ATGAA	1 cut(s)	806
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	862, 975
Vha464I	CTTAAG	2 cut(s)	353, 938
VpaK11BI	GGWCC	1 cut(s)	717
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	2 cut(s)	433, 994
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.