RchiOBHm_Chr2g0085661

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001025
Physical Location & Seq
Reverse (-)
991156 .. 992364
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46121

Sequence Viewer

Length: 303 bp
ATGAACCTGGTTATGTTTCTACTGGTGGGGAAGACTTCGGCTTTGACAATGAATGTTGCCGGGGTTGTGAAAAATTGGCTCCTAATTACGTTTTCATGGTTGGTGATCAAGGATACCGTGACGCAAATCAATCTGATTGGGTATCTGATTGTGTTTATCGGTGTCGCTTATTACAATCATGCAAAATTGCAGGCGCTTAAGGCCGTCGAGGCGCATAAGAAGGCTCAGCAGGACAATGTGGAGGTTGGGAAACTGTTGGAGGAGAGAGATGAGGATGGAAAGAAGAACGAAACTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

6.73

Isoelectric Point (pI)

16.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 2 - 59 6.3e-07 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 197
AjnI CCWGG 1 cut(s) 6
AoxI GGCC 1 cut(s) 201
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AspLEI GCGC 2 cut(s) 196, 214
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 38
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 8
BciVI GTATCC 1 cut(s) 106
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 8, 61
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 8, 61
BpiI GAAGAC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 197
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 118, 255
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 225, 294
BstF5I GGATG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 2 cut(s) 196, 214
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 200, 209
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 6, 59
BstV2I GAAGAC 1 cut(s) 38
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 2 cut(s) 196, 214
CseI GACGC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 6
CviAII CATG 2 cut(s) 96, 179
CviJI RGCY 4 cut(s) 41, 79, 203, 224
CviKI_1 RGCY 4 cut(s) 41, 79, 203, 224
DdeI CTNAG 2 cut(s) 225, 294
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 99, 182
FaiI YATR 4 cut(s) 14, 97, 180, 216
FatI CATG 2 cut(s) 95, 178
FbaI TGATCA 1 cut(s) 105
FokI GGATG 1 cut(s) 287
GlaI GCGC 2 cut(s) 195, 213
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 196, 214
Hin1II CATG 2 cut(s) 99, 182
Hin6I GCGC 2 cut(s) 194, 212
HinP1I GCGC 2 cut(s) 194, 212
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 135, 147
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 118, 255
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 182, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 209
HpyF3I CTNAG 2 cut(s) 225, 294
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 2 cut(s) 99, 182
HspAI GCGC 2 cut(s) 194, 212
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 6 cut(s) 8, 20, 73, 176, 215, 281
MabI ACCWGGT 1 cut(s) 6
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 43, 295
MluCI AATT 3 cut(s) 73, 84, 185
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 202, 235, 253, 265
MseI TTAA 1 cut(s) 198
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 8, 61
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 200, 209
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 99, 182
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 8, 61
SetI ASST 3 cut(s) 9, 92, 246
SexAI ACCWGGT 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 73, 84, 185
StyD4I CCNGG 2 cut(s) 6, 59
TaaI ACNGT 2 cut(s) 118, 255
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 73, 84, 185
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 17, 65, 84
Vha464I CTTAAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.