Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

50236810 .. 50237157

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG242500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGTCGAGCACGATCTGGAAGGCGATTGGAGCCGTCAAGGACCAGACGAGCATTGGAATCATGAAGGTCGCCAGCAACATGGCACCGGACCTGGAGGTCGCCATCGTGAAGGCCACCAGCCATGAGGATGAGCCGGCCGGTGAGAAGTACATCCGGGAGATCCTCCAGTTGACGTCATACTCCCGGGGATACTTCTACGCTTGCGTGTCGGCGGTGTCAAAGAGACTGGGGAAGACGCGCGACTGGATCGTGGCGCTCAAGGTGTTGATGCTGGTGCACCGCCTCGTGAATGACGACGACCCTGTCTTCCAGGACGAGACCCTGTCTTCAGTACATTTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

115

Amino Acids

12.74

Weight (kDa)

6.27

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	31 - 111	1.4e-23	ANTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	98, 305
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	85
AccII	CGCG	2 cut(s)	241, 243
AciI	CCGC	2 cut(s)	215, 283
AclWI	GGATC	2 cut(s)	157, 257
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	2 cut(s)	5, 176
AfaI	GTAC	2 cut(s)	152, 336
AjnI	CCWGG	2 cut(s)	93, 312
Alw21I	GWGCWC	2 cut(s)	14, 282
Alw26I	GTCTC	2 cut(s)	220, 314
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	157, 257
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	114, 138
ApaLI	GTGCAC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	243, 259
AspS9I	GGNCC	2 cut(s)	43, 91
AsuC2I	CCSGG	3 cut(s)	158, 187, 188
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	43, 91
BaeGI	GKGCMC	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	3 cut(s)	242, 301, 321
Bbv12I	GWGCWC	2 cut(s)	14, 282
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	95, 314
BciVI	GTATCC	1 cut(s)	185
BcnI	CCSGG	3 cut(s)	158, 187, 188
BcoDI	GTCTC	2 cut(s)	220, 314
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	185
Bme1390I	CCNGG	5 cut(s)	95, 158, 187, 188, 314
Bme18I	GGWCC	2 cut(s)	43, 91
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	43, 91
BmiI	GGNNCC	2 cut(s)	34, 87
BmrFI	CCNGG	5 cut(s)	95, 158, 187, 188, 314
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	3 cut(s)	242, 301, 321
BpmI	CTGGAG	2 cut(s)	116, 152
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	3 cut(s)	158, 187, 188
BsaHI	GRCGYC	2 cut(s)	5, 176
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	186, 187
BsaWI	WCCGGW	1 cut(s)	88
Bse118I	RCCGGY	2 cut(s)	136, 140
Bse1I	ACTGG	3 cut(s)	169, 234, 251
BseBI	CCWGG	2 cut(s)	95, 314
BseDI	CCNNGG	2 cut(s)	186, 187
BseGI	GGATG	2 cut(s)	136, 153
BseNI	ACTGG	3 cut(s)	169, 234, 251
BseSI	GKGCMC	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	241, 243
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	116, 140
BshNI	GGYRCC	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	14, 282
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	5 cut(s)	89, 137, 141, 157, 187
BsmAI	GTCTC	2 cut(s)	220, 314
BsnI	GGCC	2 cut(s)	116, 140
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	14, 282
Bsp143I	GATC	3 cut(s)	15, 162, 249
BspACI	CCGC	2 cut(s)	215, 283
BspANI	GGCC	2 cut(s)	116, 140
BspFNI	CGCG	2 cut(s)	241, 243
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	34, 87
BspPI	GGATC	2 cut(s)	157, 257
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	136, 140
BsrI	ACTGG	3 cut(s)	169, 234, 251
BssAI	RCCGGY	2 cut(s)	136, 140
BssECI	CCNNGG	2 cut(s)	186, 187
BssMI	GATC	3 cut(s)	15, 162, 249
BssNI	GRCGYC	2 cut(s)	5, 176
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	95, 314
BstACI	GRCGYC	2 cut(s)	5, 176
BstC8I	GCNNGC	3 cut(s)	76, 138, 205
BstF5I	GGATG	2 cut(s)	136, 153
BstFNI	CGCG	2 cut(s)	241, 243
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	243, 259
BstKTI	GATC	3 cut(s)	18, 165, 252
BstMAI	GTCTC	2 cut(s)	220, 314
BstMBI	GATC	3 cut(s)	15, 162, 249
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	95, 314
BstSCI	CCNGG	5 cut(s)	93, 156, 185, 186, 312
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	2 cut(s)	241, 243
BstV2I	GAAGAC	3 cut(s)	242, 301, 321
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	116, 140
BtsCI	GGATG	2 cut(s)	136, 153
Cac8I	GCNNGC	3 cut(s)	76, 138, 205
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	2 cut(s)	243, 259
Cfr10I	RCCGGY	2 cut(s)	136, 140
Cfr13I	GGNCC	2 cut(s)	43, 91
Cfr9I	CCCGGG	1 cut(s)	186
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	151, 335
CviAII	CATG	3 cut(s)	64, 82, 125
CviJI	RGCY	5 cut(s)	35, 116, 123, 136, 140
CviKI_1	RGCY	5 cut(s)	35, 116, 123, 136, 140
CviQI	GTAC	2 cut(s)	151, 335
DpnI	GATC	3 cut(s)	17, 164, 251
DpnII	GATC	3 cut(s)	15, 162, 249
DrdI	GACNNNNNNGTC	2 cut(s)	98, 305
DseDI	GACNNNNNNGTC	2 cut(s)	98, 305
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	43, 91
Eco52I	CGGCCG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	93, 312
FaeI	CATG	3 cut(s)	67, 85, 128
FaiI	YATR	4 cut(s)	65, 83, 126, 181
FatI	CATG	3 cut(s)	63, 81, 124
FokI	GGATG	2 cut(s)	140, 143
GlaI	GCGC	2 cut(s)	242, 258
GsuI	CTGGAG	2 cut(s)	116, 152
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	116, 140
HapII	CCGG	5 cut(s)	89, 137, 141, 157, 187
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	243, 259
Hin1I	GRCGYC	2 cut(s)	5, 176
Hin1II	CATG	3 cut(s)	67, 85, 128
Hin6I	GCGC	2 cut(s)	241, 257
HinP1I	GCGC	2 cut(s)	241, 257
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	5 cut(s)	89, 137, 141, 157, 187
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	174, 280
Hpy188III	TCNNGA	4 cut(s)	19, 64, 109, 289
Hpy8I	GTNNAC	2 cut(s)	174, 280
Hpy99I	CGWCG	2 cut(s)	10, 302
HpyAV	CCTTC	3 cut(s)	16, 61, 106
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	2 cut(s)	5, 176
Hsp92II	CATG	3 cut(s)	67, 85, 128
HspAI	GCGC	2 cut(s)	241, 257
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	15, 162, 249
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	176
MalI	GATC	3 cut(s)	17, 164, 251
MboI	GATC	3 cut(s)	15, 162, 249
MboII	GAAGA	3 cut(s)	247, 301, 321
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	14, 282
MnlI	CCTC	4 cut(s)	91, 121, 176, 296
MroNI	GCCGGC	1 cut(s)	136
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	5 cut(s)	89, 137, 141, 157, 187
MspR9I	CCNGG	5 cut(s)	95, 158, 187, 188, 314
MvaI	CCWGG	2 cut(s)	95, 314
MvnI	CGCG	2 cut(s)	241, 243
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	3 cut(s)	158, 187, 188
NdeII	GATC	3 cut(s)	15, 162, 249
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	67, 85, 128
NlaIV	GGNNCC	2 cut(s)	34, 87
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	60
PflFI	GACNNNGTC	2 cut(s)	305, 325
PfoI	TCCNGGA	2 cut(s)	156, 312
Psp6I	CCWGG	2 cut(s)	93, 312
PspGI	CCWGG	2 cut(s)	93, 312
PspN4I	GGNNCC	2 cut(s)	34, 87
PspPI	GGNCC	2 cut(s)	43, 91
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	2 cut(s)	305, 325
RsaI	GTAC	2 cut(s)	152, 336
RsaNI	GTAC	2 cut(s)	151, 335
RseI	CAYNNNNRTG	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	15, 162, 249
Sau96I	GGNCC	2 cut(s)	43, 91
ScrFI	CCNGG	5 cut(s)	95, 158, 187, 188, 314
SduI	GDGCHC	2 cut(s)	14, 282
SetI	ASST	5 cut(s)	72, 96, 102, 179, 267
SfaNI	GCATC	1 cut(s)	261
SinI	GGWCC	2 cut(s)	43, 91
SmaI	CCCGGG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	2 cut(s)	215, 283
StyD4I	CCNGG	5 cut(s)	93, 156, 185, 186, 312
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	2 cut(s)	150, 334
TfiI	GAWTC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	80
TspMI	CCCGGG	1 cut(s)	186
Tth111I	GACNNNGTC	2 cut(s)	305, 325
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	43, 91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.