Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

3580396 .. 3582090

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAAAGGTGGCGCACTAAGCGAAAGCGTGATAAAGAACATCGTTCTCTCATACAGCTACGTAGCGATATGGATCTTCTTAAGCTTCACAGTAATTGTCTACAACAAATACATCCTCGACAAGAAGATGTACAATTGGCCATTCCCGATCTCACTCACAATGATCCACATGTCCTTTTGTTCAACCCTAGCTTTTCTCATCATCAAGGTTTTCAAATTCGTCGAGCCAGTTAAAATGACTCGCGAGACTTACCTGAGATCCGTCGTACCGATCGGTGCTTTGTACGCTCTCTCACTCTGGTTATCGAATTCCGCTTACATTTACCTATCAGTCTCCTTTATCCAGATGCTTAAAGCTCTCATGCCTGTAGCTGTTTACTCAATCGGTGTTCTGTTTAAAAAGGAAGGATTCAAATCTGATACTATGATGAACATGTTATCGATTTCGTTTGGTGTTGCGATTGCTGCTTATGGTGAAGCTAGGTTTGATGTTTGGGGTGTGATTCTTCAGCTTGGTGCTGTTGCTTTTGAAGCTACTCGTTTGGTTTTGATTCAGATCTTGTTAGGAGATAAAGGGATTAAGCTTAATCCCATTACTTCGTTATATTACGTTGCTCCTTGTTGTTTGGCCTTCTTGTTTATTCCATGGATCTACGTTGAGTTTCCTGTTCTTAGAGATACGTCTAGCTTCCACTTGGATTACGCAATTTTCGGAGCGAATTCGTTTTGTGCGTTTGCGTTGAATCTTGCTGTGTTTCTTTTGGTTGGGAAGACATCTGCTTTGACTATGAATGTTGCTGGTGTGGTTAAGGATTGGCTCTTGATTGCTTTCTCATGGTCTGTGATTAAGGATACTGTGACTCCTATTAATCTTTTCGGGTACGGGATTGCGTTCTTGGGAGTTGCGTATTATAATCACGCCAAGTTACAGGCTTTGAAGGCTAAAGAGGAGGAGAAGAAGAAGATTCAGCAAGCTGATGAGGAGAGTGGTCGGTTGCTTGAAGAGAGGGAAGGTGATGTTGAAGGTAAGAAGAATGATCAGTCTGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

351

Amino Acids

39.27

Weight (kDa)

8.79

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 306	2.3e-23	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	4 cut(s)	83, 160, 255, 659
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	3 cut(s)	218, 310, 721
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	4 cut(s)	134, 270, 287, 884
AflII	CTTAAG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	171, 435
AgsI	TTSAA	8 cut(s)	186, 217, 415, 533, 745, 940, 1004, 1025
Alw26I	GTCTC	2 cut(s)	242, 340
AlwI	GGATC	4 cut(s)	83, 160, 255, 659
AoxI	GGCC	2 cut(s)	140, 630
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	3 cut(s)	218, 310, 721
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AseI	ATTAAT	1 cut(s)	870
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	488, 1028
BalI	TGGCCA	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	847
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	2 cut(s)	242, 340
BfaI	CTAG	3 cut(s)	191, 483, 687
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	82
BfuI	GTATCC	1 cut(s)	847
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	779
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	3 cut(s)	74, 415, 557
BsaJI	CCNNGG	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	3 cut(s)	74, 415, 557
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	3 cut(s)	74, 415, 557
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	965, 968, 998
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	142, 632
BshVI	ATCGAT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	242, 340
BsnI	GGCC	2 cut(s)	142, 632
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
Bsp19I	CCATGG	1 cut(s)	647
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	142, 632
BspCNI	CTCAG	1 cut(s)	249
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	246
BspPI	GGATC	4 cut(s)	83, 160, 255, 659
BspTI	CTTAAG	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	1 cut(s)	999
BstAFI	CTTAAG	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	975
BstDEI	CTNAG	3 cut(s)	20, 257, 674
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	8 cut(s)	78, 153, 168, 263, 276, 561, 654, 1042
BstMAI	GTCTC	2 cut(s)	242, 340
BstMBI	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 287, 467, 533, 941
BstNSI	RCATGY	2 cut(s)	175, 439
BstSFI	CTRYAG	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	64
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	4 cut(s)	75, 260, 558, 651
BstYI	RGATCY	4 cut(s)	75, 260, 558, 651
Bsu15I	ATCGAT	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	2 cut(s)	142, 632
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	975
CfoI	GCGC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	4 cut(s)	133, 269, 286, 883
CviAII	CATG	5 cut(s)	172, 364, 436, 648, 837
CviQI	GTAC	4 cut(s)	133, 269, 286, 883
DdeI	CTNAG	3 cut(s)	20, 257, 674
DpnI	GATC	8 cut(s)	77, 152, 167, 262, 275, 560, 653, 1041
DpnII	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
DraI	TTTAAA	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	494
EcoRI	GAATTC	2 cut(s)	310, 721
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	5 cut(s)	175, 367, 439, 651, 840
FatI	CATG	5 cut(s)	171, 363, 435, 647, 836
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	3 cut(s)	191, 483, 687
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	142, 632
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	5 cut(s)	175, 367, 439, 651, 840
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	2 cut(s)	85, 584
HinfI	GANTC	7 cut(s)	241, 411, 505, 553, 745, 862, 967
HphI	GGTGA	2 cut(s)	488, 1028
Hpy166II	GTNNAC	2 cut(s)	103, 379
Hpy188I	TCNGA	3 cut(s)	421, 558, 716
Hpy188III	TCNNGA	4 cut(s)	148, 245, 346, 823
Hpy8I	GTNNAC	2 cut(s)	103, 379
Hpy99I	CGWCG	2 cut(s)	227, 269
HpyAV	CCTTC	5 cut(s)	401, 643, 934, 1007, 1019
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	4 cut(s)	63, 612, 657, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 287, 467, 533, 941
HpyF3I	CTNAG	3 cut(s)	20, 257, 674
HpySE526I	ACGT	4 cut(s)	63, 612, 657, 683
Hsp92II	CATG	5 cut(s)	175, 367, 439, 651, 840
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
LmnI	GCTCC	2 cut(s)	622, 716
LpnPI	CCDG	9 cut(s)	243, 269, 286, 359, 381, 681, 786, 917, 1032
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	191, 483, 687
MaeII	ACGT	4 cut(s)	63, 612, 657, 683
MaeIII	GTNAC	2 cut(s)	859, 927
MalI	GATC	8 cut(s)	77, 152, 167, 262, 275, 560, 653, 1041
MboI	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
MboII	GAAGA	9 cut(s)	70, 139, 500, 784, 970, 973, 976, 1016, 1045
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	4 cut(s)	75, 260, 558, 651
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	7 cut(s)	96, 136, 218, 310, 708, 721, 1051
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	235, 856
MnlI	CCTC	5 cut(s)	128, 943, 946, 976, 1002
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	5 cut(s)	21, 287, 467, 533, 941
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
NlaIII	CATG	5 cut(s)	175, 367, 439, 651, 840
NmuCI	GTSAC	1 cut(s)	859
NruI	TCGCGA	1 cut(s)	246
NspI	RCATGY	2 cut(s)	175, 439
PciI	ACATGT	2 cut(s)	171, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	411, 505, 553, 745, 967
PkrI	GCNGC	1 cut(s)	469
Ple19I	CGATCG	1 cut(s)	276
PleI	GAGTC	2 cut(s)	235, 856
PpsI	GAGTC	2 cut(s)	235, 856
Ppu21I	YACGTR	1 cut(s)	64
PscI	ACATGT	2 cut(s)	171, 435
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	915
PsuI	RGATCY	4 cut(s)	75, 260, 558, 651
PvuI	CGATCG	1 cut(s)	276
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	4 cut(s)	134, 270, 287, 884
RsaNI	GTAC	4 cut(s)	133, 269, 286, 883
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	8 cut(s)	75, 150, 165, 260, 273, 558, 651, 1039
SchI	GAGTC	2 cut(s)	235, 856
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	7 cut(s)	96, 136, 218, 310, 708, 721, 1051
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	3 cut(s)	191, 483, 687
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	4 cut(s)	66, 615, 660, 686
TaqI	TCGA	4 cut(s)	120, 225, 308, 443
TasI	AATT	7 cut(s)	96, 136, 218, 310, 708, 721, 1051
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	5 cut(s)	411, 505, 553, 745, 967
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	446, 806
TspGWI	ACGGA	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	3 cut(s)	218, 310, 721
XceI	RCATGY	2 cut(s)	175, 439
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	191, 483, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.