Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001679.1

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

96029 .. 96472

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001679.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgctggtgcacctcctcgtgaacgacggcaaccctgtcttccgtacatttgtgttgatccaaatcttgttgacatctaaagggatcaccttgaatcccattacctctttgtactatgtggctccttgttgcttggcttttctgttggtgccttggatctatgtggagtacccaacactgagggacacctcgagtttccattttgattacgtgattttcgggaccaattccttctgtgcgttcgcgttgaatcttgctgtgttcttgcttgtggggaagacctcggctttgacgatgaatgtggcaggtgtggtgaaagattggctcttgattgccttgtcttggtctgtgatcaaggacactgtgacgccaatcaatctggtgggttatggactaacactcgaaattgcagtgatcaaatatttaacaagctatcgcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

147

Amino Acids

16.42

Weight (kDa)

7.7

Isoelectric Point (pI)

11.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	245
AclWI	GGATC	3 cut(s)	52, 92, 164
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	3 cut(s)	46, 113, 170
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	94, 250
AluBI	AGCT	1 cut(s)	432
AluI	AGCT	1 cut(s)	432
Alw21I	GWGCWC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	8
AlwI	GGATC	3 cut(s)	52, 92, 164
Ama87I	CYCGRG	1 cut(s)	190
ApaLI	GTGCAC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	79, 325
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	31, 284
Bbv12I	GWGCWC	1 cut(s)	12
BceAI	ACGGC	1 cut(s)	43
BclI	TGATCA	2 cut(s)	351, 414
BfuAI	ACCTGC	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	123, 150, 223
BpiI	GAAGAC	2 cut(s)	31, 284
BsaAI	YACGTR	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	152, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	152, 282
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	190
BslFI	GGGAC	2 cut(s)	197, 235
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	197, 235
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	5 cut(s)	57, 84, 156, 351, 414
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	123, 150, 223
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	3 cut(s)	52, 92, 164
BspT107I	GGYRCC	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	152, 282
BssMI	GATC	5 cut(s)	57, 84, 156, 351, 414
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	5 cut(s)	60, 87, 159, 354, 417
BstMBI	GATC	5 cut(s)	57, 84, 156, 351, 414
BstNSI	RCATGY	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	245
BstV2I	GAAGAC	2 cut(s)	31, 284
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	176, 360, 417
BveI	ACCTGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	45, 112, 169
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	5 cut(s)	122, 137, 287, 325, 432
CviKI_1	RGCY	5 cut(s)	122, 137, 287, 325, 432
CviQI	GTAC	3 cut(s)	45, 112, 169
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	5 cut(s)	59, 86, 158, 353, 416
DpnII	GATC	5 cut(s)	57, 84, 156, 351, 414
Eco130I	CCWWGG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	442
FaiI	YATR	4 cut(s)	117, 162, 390, 440
FaqI	GGGAC	2 cut(s)	197, 235
FatI	CATG	1 cut(s)	438
FbaI	TGATCA	2 cut(s)	351, 414
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	94, 250
HphI	GGTGA	2 cut(s)	79, 325
Hpy166II	GTNNAC	3 cut(s)	10, 22, 72
Hpy188III	TCNNGA	3 cut(s)	19, 220, 328
Hpy8I	GTNNAC	3 cut(s)	10, 22, 72
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	10, 410
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	1 cut(s)	442
Ksp22I	TGATCA	2 cut(s)	351, 414
Kzo9I	GATC	5 cut(s)	57, 84, 156, 351, 414
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	48, 291, 365
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	5 cut(s)	59, 86, 158, 353, 416
MboI	GATC	5 cut(s)	57, 84, 156, 351, 414
MboII	GAAGA	2 cut(s)	31, 289
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	226, 405
MnlI	CCTC	6 cut(s)	23, 26, 115, 174, 199, 292
MseI	TTAA	1 cut(s)	425
MvnI	CGCG	1 cut(s)	245
NdeII	GATC	5 cut(s)	57, 84, 156, 351, 414
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	3 cut(s)	123, 150, 223
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	94, 250
Ppu21I	YACGTR	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	123, 150, 223
PspPI	GGNCC	1 cut(s)	222
PspXI	VCTCGAGB	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	3 cut(s)	46, 113, 170
RsaNI	GTAC	3 cut(s)	45, 112, 169
SaqAI	TTAA	1 cut(s)	425
Sau3AI	GATC	5 cut(s)	57, 84, 156, 351, 414
Sau96I	GGNCC	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	15, 92, 107, 191, 213, 284, 310, 434
Sfr274I	CTCGAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	226, 405
SspI	AATATT	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	191, 402
TasI	AATT	2 cut(s)	226, 405
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	94, 250
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	3 cut(s)	183, 367, 417
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	183, 367, 417
VneI	GTGCAC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	222
XceI	RCATGY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.