Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

67059065 .. 67059845

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG429400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGCCGAGCATGGTCCGGAAAGCGATCGGAGCCGTCAAGGACCAGACGAGCATCAGAATCGCAAAGGTCGCTAGCAACATCGCGCCGGACCTGGAGGTCGCCATCGTGAAGGCCACCAGCCACGAGGACGAGCCGGCCGGCGAGAAGTACATCCGGGAGATCCTCCAGCTGACGTCATACTCCTGGGGATACATCCACGCGTGCATGTCGGCGGTGTCAAAGCGACTGGGGAAGACACGCGACTGGATCGTGGTGCTCAAGGCATTGATGCTAGTGCACCGCCTCGTCAACAACGACGACCCTGTCTTCCAGGACGAGACCCTGGATCACCTTGAATCCCATTACCTCTTTGTACTATGTGGCTCCTTGTTGCTTGGCTTTTCTGTTGGTGCCTTGGATCTATGTGGAGTACCAAACACTGAGGGACACCTCGAGTTTCCATTTCGATTACGTGATTTTCGGGACCAATTCCTTCTGTACGTTCACTTTGAATCTTGCTGTGTTCTTGCTTGTGGGGAAGACCTCGGCCTTGACGATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCAATCAATCTGGTGGGTTATGGACTAACACTCGAAATTGCAGTGATCAAATATCTAACAAGCTATCGCAGATGATTTTTGAATTTGTAGCAATCAAGGCTTTACTGCCATTAAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

244

Amino Acids

27.07

Weight (kDa)

5.22

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	31 - 110	3.6e-21	ANTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	98, 305
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	4, 392
AccII	CGCG	3 cut(s)	86, 203, 243
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	3 cut(s)	215, 283, 549
AclWI	GGATC	4 cut(s)	157, 257, 336, 408
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	695
AcyI	GRCGYC	2 cut(s)	5, 176
AfaI	GTAC	4 cut(s)	152, 357, 414, 482
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	338, 494, 695
AjnI	CCWGG	4 cut(s)	93, 185, 312, 324
AluBI	AGCT	2 cut(s)	172, 676
AluI	AGCT	2 cut(s)	172, 676
Alw21I	GWGCWC	2 cut(s)	261, 282
Alw26I	GTCTC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	157, 257, 336, 408
Ama87I	CYCGRG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	3 cut(s)	114, 138, 529
ApaLI	GTGCAC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	695
AspLEI	GCGC	2 cut(s)	7, 88
AspS9I	GGNCC	4 cut(s)	16, 43, 91, 466
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	323, 569
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	4 cut(s)	16, 43, 91, 466
BaeGI	GKGCMC	1 cut(s)	282
BanI	GGYRCC	2 cut(s)	4, 392
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	3 cut(s)	242, 301, 528
Bbv12I	GWGCWC	2 cut(s)	261, 282
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	4 cut(s)	95, 187, 314, 326
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	2 cut(s)	595, 658
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	2 cut(s)	75, 275
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	185
Bme1390I	CCNGG	5 cut(s)	95, 158, 187, 314, 326
Bme18I	GGWCC	4 cut(s)	16, 43, 91, 466
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	16, 43, 91, 466
BmiI	GGNNCC	5 cut(s)	6, 34, 367, 394, 467
BmrFI	CCNGG	5 cut(s)	95, 158, 187, 314, 326
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	63, 261
BmtI	GCTAGC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	3 cut(s)	242, 301, 528
BpmI	CTGGAG	2 cut(s)	116, 152
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	5, 176
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	186, 324, 396, 526
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	2 cut(s)	136, 140
Bse1I	ACTGG	2 cut(s)	234, 251
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	95, 187, 314, 326
BseDI	CCNNGG	4 cut(s)	186, 324, 396, 526
BseGI	GGATG	2 cut(s)	153, 195
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	234, 251
BseSI	GKGCMC	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	138
Bsh1236I	CGCG	3 cut(s)	86, 203, 243
Bsh1285I	CGRYCG	2 cut(s)	30, 141
BshFI	GGCC	3 cut(s)	116, 140, 531
BshNI	GGYRCC	2 cut(s)	4, 392
BsiEI	CGRYCG	2 cut(s)	30, 141
BsiHKAI	GWGCWC	2 cut(s)	261, 282
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	5 cut(s)	19, 89, 137, 141, 157
BslFI	GGGAC	2 cut(s)	441, 479
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	2 cut(s)	441, 479
BsnI	GGCC	3 cut(s)	116, 140, 531
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	261, 282
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
BspACI	CCGC	3 cut(s)	215, 283, 549
BspANI	GGCC	3 cut(s)	116, 140, 531
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	3 cut(s)	86, 203, 243
BspLI	GGNNCC	5 cut(s)	6, 34, 367, 394, 467
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	4 cut(s)	157, 257, 336, 408
BspT107I	GGYRCC	2 cut(s)	4, 392
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	136, 140
BsrI	ACTGG	2 cut(s)	234, 251
BssAI	RCCGGY	2 cut(s)	136, 140
BssECI	CCNNGG	4 cut(s)	186, 324, 396, 526
BssMI	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
BssNI	GRCGYC	2 cut(s)	5, 176
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	4 cut(s)	95, 187, 314, 326
Bst4CI	ACNGT	1 cut(s)	608
BstACI	GRCGYC	2 cut(s)	5, 176
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	76, 138, 142, 205
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	153, 195
BstFNI	CGCG	3 cut(s)	86, 203, 243
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 88
BstKTI	GATC	7 cut(s)	30, 165, 252, 331, 403, 598, 661
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
BstMCI	CGRYCG	2 cut(s)	30, 141
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 71, 710
BstNI	CCWGG	4 cut(s)	95, 187, 314, 326
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	5 cut(s)	93, 156, 185, 312, 324
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	3 cut(s)	86, 203, 243
BstV2I	GAAGAC	3 cut(s)	242, 301, 528
BstX2I	RGATCY	2 cut(s)	162, 400
BstYI	RGATCY	2 cut(s)	162, 400
BstZI	CGGCCG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	116, 140, 531
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	153, 195
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	420, 604, 661
Cac8I	GCNNGC	4 cut(s)	76, 138, 142, 205
CfoI	GCGC	2 cut(s)	7, 88
Cfr10I	RCCGGY	2 cut(s)	136, 140
Cfr13I	GGNCC	4 cut(s)	16, 43, 91, 466
Csp6I	GTAC	4 cut(s)	151, 356, 413, 481
CviAII	CATG	2 cut(s)	13, 208
CviQI	GTAC	4 cut(s)	151, 356, 413, 481
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	7 cut(s)	29, 164, 251, 330, 402, 597, 660
DpnII	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
DrdI	GACNNNNNNGTC	2 cut(s)	98, 305
DseDI	GACNNNNNNGTC	2 cut(s)	98, 305
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	4 cut(s)	16, 43, 91, 466
Eco52I	CGGCCG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	434
EcoRII	CCWGG	4 cut(s)	93, 185, 312, 324
EcoT14I	CCWWGG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	16, 211
FaiI	YATR	7 cut(s)	14, 181, 209, 361, 406, 634, 733
FaqI	GGGAC	2 cut(s)	441, 479
FatI	CATG	2 cut(s)	12, 207
FauI	CCCGC	1 cut(s)	542
FbaI	TGATCA	2 cut(s)	595, 658
FokI	GGATG	2 cut(s)	140, 182
FspBI	CTAG	2 cut(s)	75, 275
GlaI	GCGC	2 cut(s)	6, 87
GsuI	CTGGAG	2 cut(s)	116, 152
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	116, 140, 531
HapII	CCGG	5 cut(s)	19, 89, 137, 141, 157
HhaI	GCGC	2 cut(s)	7, 88
Hin1I	GRCGYC	2 cut(s)	5, 176
Hin1II	CATG	2 cut(s)	16, 211
Hin6I	GCGC	2 cut(s)	5, 86
HinP1I	GCGC	2 cut(s)	5, 86
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	60, 338, 494
HpaII	CCGG	5 cut(s)	19, 89, 137, 141, 157
HphI	GGTGA	2 cut(s)	323, 569
Hpy166II	GTNNAC	3 cut(s)	280, 292, 487
Hpy188I	TCNGA	2 cut(s)	32, 59
Hpy188III	TCNNGA	4 cut(s)	19, 109, 464, 572
Hpy8I	GTNNAC	3 cut(s)	280, 292, 487
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	106, 485, 590
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	3 cut(s)	176, 454, 483
HpyCH4V	TGCA	3 cut(s)	207, 280, 654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 71, 710
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	3 cut(s)	176, 454, 483
Hsp92I	GRCGYC	2 cut(s)	5, 176
Hsp92II	CATG	2 cut(s)	16, 211
HspAI	GCGC	2 cut(s)	5, 86
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	2 cut(s)	136, 140
KroNI	GCCGGC	2 cut(s)	138, 142
Ksp22I	TGATCA	2 cut(s)	595, 658
Kzo9I	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
LmnI	GCTCC	2 cut(s)	32, 371
LweI	GCATC	2 cut(s)	63, 261
MaeI	CTAG	2 cut(s)	75, 275
MaeII	ACGT	3 cut(s)	176, 454, 483
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	7 cut(s)	29, 164, 251, 330, 402, 597, 660
MboI	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
MboII	GAAGA	3 cut(s)	247, 301, 533
MflI	RGATCY	2 cut(s)	162, 400
MhlI	GDGCHC	2 cut(s)	261, 282
MluCI	AATT	3 cut(s)	470, 649, 695
MluI	ACGCGT	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	91, 121, 176, 296, 359, 418, 443, 536
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	2 cut(s)	136, 140
MseI	TTAA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	5 cut(s)	19, 89, 137, 141, 157
MspR9I	CCNGG	5 cut(s)	95, 158, 187, 314, 326
MvaI	CCWGG	4 cut(s)	95, 187, 314, 326
MvnI	CGCG	3 cut(s)	86, 203, 243
MwoI	GCNNNNNNNGC	3 cut(s)	32, 71, 710
NaeI	GCCGGC	2 cut(s)	138, 142
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
NgoMIV	GCCGGC	2 cut(s)	136, 140
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	16, 211
NlaIV	GGNNCC	5 cut(s)	6, 34, 367, 394, 467
NmeAIII	GCCGAG	2 cut(s)	33, 507
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 534
PdiI	GCCGGC	2 cut(s)	138, 142
PfeI	GAWTC	3 cut(s)	60, 338, 494
PflFI	GACNNNGTC	1 cut(s)	305
PfoI	TCCNGGA	2 cut(s)	156, 312
Ple19I	CGATCG	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	455
Psp6I	CCWGG	4 cut(s)	93, 185, 312, 324
PspGI	CCWGG	4 cut(s)	93, 185, 312, 324
PspN4I	GGNNCC	5 cut(s)	6, 34, 367, 394, 467
PspPI	GGNCC	4 cut(s)	16, 43, 91, 466
PspXI	VCTCGAGB	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	162, 400
PsyI	GACNNNGTC	1 cut(s)	305
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	4 cut(s)	152, 357, 414, 482
RsaNI	GTAC	4 cut(s)	151, 356, 413, 481
SaqAI	TTAA	1 cut(s)	725
Sau3AI	GATC	7 cut(s)	27, 162, 249, 328, 400, 595, 658
Sau96I	GGNCC	4 cut(s)	16, 43, 91, 466
ScrFI	CCNGG	5 cut(s)	95, 158, 187, 314, 326
SduI	GDGCHC	2 cut(s)	261, 282
SfaNI	GCATC	2 cut(s)	63, 261
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	4 cut(s)	16, 43, 91, 466
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	260, 434
SmoI	CTYRAG	2 cut(s)	260, 434
Sse9I	AATT	3 cut(s)	470, 649, 695
SsiI	CCGC	3 cut(s)	215, 283, 549
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	75, 275
StyD4I	CCNGG	5 cut(s)	93, 156, 185, 312, 324
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	3 cut(s)	179, 457, 486
TaqI	TCGA	3 cut(s)	435, 448, 646
TasI	AATT	3 cut(s)	470, 649, 695
TatI	WGTACW	2 cut(s)	150, 355
TfiI	GAWTC	3 cut(s)	60, 338, 494
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TscAI	CASTG	3 cut(s)	427, 611, 661
TseFI	GTSAC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	3 cut(s)	427, 611, 661
Tth111I	GACNNNGTC	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	4 cut(s)	16, 43, 91, 466
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	2 cut(s)	75, 275
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.