Rroxscaffold_2G00152510

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001025
Physical Location & Seq
Reverse (-)
89447923 .. 89450147
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152510.1

Sequence Viewer

Length: 1032 bp
ATGGCGCTTTCCGACGGTGTGGTGAAGAAGGTCCTCCTCTCCTACGCCTACGTCGCCATATGGATCTTCCTCAGCTTCACTGTCATCGTCTACAACAAGTACATCCTCGACCGCAAGCTCTACAATTGGCCCTTCCCAATTTCCCTCACCATGATCCACATGGCCTTCTGCTCCTCCCTCGCCTACCTCCTTATCAAGGTCTTCAAGCTCGTCGAGCCAGTCTCCATGTCAAGGGACCTCTACCTCAAGTCCGTCGTCCCCATCGGAGCTCTGTACGCTCTGTCCCTCTGGTTCTCCAACTCCGCTTACATCTTTCTGTCAGTGTCTTTTATTCAGATGCTCAAGGCTCTAATGCCGGTGGCCGTTTACTCGATCGGGATTCTCATCAAGAAGGACCCTTTCAAGTCGGATACTATGGTCAACATGCTCTCGATCTCGTTCGGCGTGGCGGTTGCGGCTTATGGTGAGGCGAAATTCAACTCGTGGGGAGTGAGCCTGCAGCTACTGGCGGTGGGTTTCGAGGCGACGAGGTTGGTTCTGATTCAGATCTTGCTTAATGCTAAGGGTATTAGCTTGAATCCGATTACTTCTCTTTATTATGTTGCCCCGTGTTGCTTTGCGTTTCTGTGCATTCCTTGGATCATTGTGGAGTTCCCCGTGTTGAAGGAGAGTTCGAGTTTCCACTTTGATTTCGTCATTTTCGGGACGAATTCGCTCTGTGCGTTTGCATTGAACCTGGCTGTGTTTCTGCTGGTGGGGAAGACTTCGGCTTTGACTATGAATGTTGCCGGGGTTGTGAAAGATTGGCTCTTGATTGCGTTTTCGTGGTCGGTGATCAAGGATACCGTGACGCCAATCAATCTGATTGGGTATCTGATTGCGTTTATCGGTGTGGCGTATTACAATCATGCGAAATTGCAGGCGCTTAAGGCCGCCGAGGCGCAGAAGAAGGCTCAGCAGGACAATGTGGAGGCTGGGAAGCTGTTGGAGGAGAGAGATGAGGATGGAAAGAAGAACGAAACTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

343

Amino Acids

38.17

Weight (kDa)

8.76

Isoelectric Point (pI)

21.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 16 - 302 2.7e-22 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 6 cut(s) 112, 303, 449, 455, 509, 933
AclWI GGATC 3 cut(s) 71, 148, 647
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 473, 709
AcyI GRCGYC 1 cut(s) 851
AfaI GTAC 2 cut(s) 101, 275
AfiI CCNNNNNNNGG 2 cut(s) 196, 231
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 6 cut(s) 205, 403, 478, 577, 664, 733
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 7 cut(s) 75, 118, 208, 269, 502, 573, 982
AluI AGCT 7 cut(s) 75, 118, 208, 269, 502, 573, 982
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 3 cut(s) 71, 148, 647
AlwNI CAGNNNCTG 1 cut(s) 505
AoxI GGCC 4 cut(s) 128, 162, 360, 930
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 2 cut(s) 473, 709
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AspLEI GCGC 3 cut(s) 7, 925, 943
AspS9I GGNCC 4 cut(s) 31, 129, 235, 394
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 4 cut(s) 34, 139, 476, 844
AvaII GGWCC 3 cut(s) 31, 235, 394
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 193, 767
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 269, 998
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 737
BciVI GTATCC 2 cut(s) 403, 835
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 2 cut(s) 8, 926
BfrI CTTAAG 1 cut(s) 926
BfuI GTATCC 2 cut(s) 403, 835
BglI GCCNNNNNGGC 1 cut(s) 938
BglII AGATCT 1 cut(s) 546
BisI GCNGC 3 cut(s) 456, 500, 933
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 3 cut(s) 457, 501, 934
Bme1390I CCNGG 2 cut(s) 737, 790
Bme18I GGWCC 3 cut(s) 31, 235, 394
BmgT120I GGNCC 4 cut(s) 31, 129, 235, 394
BmiI GGNNCC 2 cut(s) 236, 396
BmrFI CCNGG 2 cut(s) 737, 790
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 2 cut(s) 193, 767
BplI GAGNNNNNCTC 2 cut(s) 206, 238
Bpu10I CCTNAGC 2 cut(s) 71, 561
Bpu1102I GCTNAGC 1 cut(s) 954
BpuEI CTTGAG 2 cut(s) 230, 326
BpuMI CCSGG 1 cut(s) 790
BsaBI GATNNNNATC 2 cut(s) 383, 545
BsaHI GRCGYC 1 cut(s) 851
BsaJI CCNNGG 3 cut(s) 635, 789, 936
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 231
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 218, 510
Bse8I GATNNNNATC 2 cut(s) 383, 545
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 635, 789, 936
BseGI GGATG 2 cut(s) 102, 1009
BseJI GATNNNNATC 2 cut(s) 383, 545
BseLI CCNNNNNNNGG 2 cut(s) 196, 231
BseMII CTCAG 2 cut(s) 85, 968
BseNI ACTGG 2 cut(s) 218, 510
BseRI GAGGAG 3 cut(s) 26, 163, 1004
BseXI GCAGC 1 cut(s) 511
BseYI CCCAGC 1 cut(s) 974
Bsh1285I CGRYCG 2 cut(s) 112, 375
BshFI GGCC 4 cut(s) 130, 164, 362, 932
BsiEI CGRYCG 2 cut(s) 112, 375
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 356, 789
BslFI GGGAC 4 cut(s) 242, 248, 268, 718
BslI CCNNNNNNNGG 2 cut(s) 196, 231
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 4 cut(s) 242, 248, 268, 718
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 4 cut(s) 130, 164, 362, 932
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
Bsp1720I GCTNAGC 1 cut(s) 954
BspACI CCGC 6 cut(s) 112, 303, 449, 455, 509, 933
BspANI GGCC 4 cut(s) 130, 164, 362, 932
BspCNI CTCAG 2 cut(s) 84, 967
BspLI GGNNCC 2 cut(s) 236, 396
BspMAI CTGCAG 1 cut(s) 501
BspPI GGATC 3 cut(s) 71, 148, 647
BspTI CTTAAG 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 218, 510
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 635, 789, 936
BssMI GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
BssNI GRCGYC 1 cut(s) 851
BssSI CACGAG 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 3 cut(s) 17, 82, 847
BstACI GRCGYC 1 cut(s) 851
BstAFI CTTAAG 1 cut(s) 926
BstC8I GCNNGC 3 cut(s) 116, 497, 921
BstDEI CTNAG 4 cut(s) 71, 561, 954, 1023
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 102, 1009
BstH2I RGCGCY 2 cut(s) 8, 926
BstHHI GCGC 3 cut(s) 7, 925, 943
BstKTI GATC 7 cut(s) 66, 156, 375, 435, 549, 642, 837
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
BstMCI CGRYCG 2 cut(s) 112, 375
BstMWI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 735, 788
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 2 cut(s) 193, 767
BstX2I RGATCY 2 cut(s) 63, 546
BstYI RGATCY 2 cut(s) 63, 546
BsuI GTATCC 2 cut(s) 403, 835
BsuRI GGCC 4 cut(s) 130, 164, 362, 932
BtsCI GGATG 2 cut(s) 102, 1009
BtsIMutI CAGTG 2 cut(s) 78, 327
Cac8I GCNNGC 3 cut(s) 116, 497, 921
CaiI CAGNNNCTG 1 cut(s) 505
CfoI GCGC 3 cut(s) 7, 925, 943
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 4 cut(s) 31, 129, 235, 394
CseI GACGC 1 cut(s) 859
Csp6I GTAC 2 cut(s) 100, 274
CviAII CATG 5 cut(s) 151, 160, 226, 424, 908
CviQI GTAC 2 cut(s) 100, 274
DdeI CTNAG 4 cut(s) 71, 561, 954, 1023
DpnI GATC 7 cut(s) 65, 155, 374, 434, 548, 641, 836
DpnII GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
EaeI YGGCCR 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 3 cut(s) 31, 235, 394
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 3 cut(s) 31, 235, 394
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 5 cut(s) 154, 163, 229, 427, 911
FaqI GGGAC 4 cut(s) 242, 248, 268, 718
FatI CATG 5 cut(s) 150, 159, 225, 423, 907
FauNDI CATATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 456, 500, 933
FokI GGATG 2 cut(s) 89, 1016
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 3 cut(s) 456, 500, 933
GlaI GCGC 3 cut(s) 6, 924, 942
GluI GCNGC 3 cut(s) 456, 500, 933
GsaI CCCAGC 1 cut(s) 978
HaeII RGCGCY 2 cut(s) 8, 926
HaeIII GGCC 4 cut(s) 130, 164, 362, 932
HapII CCGG 2 cut(s) 356, 789
HgaI GACGC 1 cut(s) 859
HhaI GCGC 3 cut(s) 7, 925, 943
Hin1I GRCGYC 1 cut(s) 851
Hin1II CATG 5 cut(s) 154, 163, 229, 427, 911
Hin6I GCGC 3 cut(s) 5, 923, 941
HinP1I GCGC 3 cut(s) 5, 923, 941
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 379, 541, 577
HpaII CCGG 2 cut(s) 356, 789
HphI GGTGA 4 cut(s) 34, 139, 476, 844
Hpy166II GTNNAC 3 cut(s) 91, 367, 421
Hpy188I TCNGA 9 cut(s) 13, 266, 336, 409, 540, 546, 582, 864, 876
Hpy188III TCNNGA 6 cut(s) 376, 388, 430, 703, 811, 1025
Hpy8I GTNNAC 3 cut(s) 91, 367, 421
Hpy99I CGWCG 5 cut(s) 17, 56, 215, 257, 529
HpyAV CCTTC 6 cut(s) 22, 142, 175, 385, 658, 943
HpyCH4III ACNGT 3 cut(s) 17, 82, 847
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 499, 630, 728, 919
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
HpyF3I CTNAG 4 cut(s) 71, 561, 954, 1023
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 851
Hsp92II CATG 5 cut(s) 154, 163, 229, 427, 911
HspAI GCGC 3 cut(s) 5, 923, 941
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
LmnI GCTCC 2 cut(s) 176, 266
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 1 cut(s) 327
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 847
MalI GATC 7 cut(s) 65, 155, 374, 434, 548, 641, 836
MboI GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
MboII GAAGA 6 cut(s) 37, 58, 193, 772, 958, 1024
MfeI CAATTG 1 cut(s) 124
MflI RGATCY 2 cut(s) 63, 546
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 5 cut(s) 124, 138, 473, 709, 914
MmeI TCCRAC 4 cut(s) 36, 321, 387, 966
MseI TTAA 2 cut(s) 555, 927
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 2 cut(s) 356, 789
MspR9I CCNGG 2 cut(s) 737, 790
MunI CAATTG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 6 cut(s) 53, 214, 275, 455, 929, 938
NciI CCSGG 1 cut(s) 790
NdeI CATATG 1 cut(s) 59
NdeII GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
NlaIII CATG 5 cut(s) 154, 163, 229, 427, 911
NlaIV GGNNCC 2 cut(s) 236, 396
NmeAIII GCCGAG 1 cut(s) 961
NmuCI GTSAC 1 cut(s) 847
NspI RCATGY 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 719
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 379, 541, 577
PkrI GCNGC 3 cut(s) 457, 501, 934
Ple19I CGATCG 1 cut(s) 375
PpuMI RGGWCCY 3 cut(s) 31, 235, 394
Psp124BI GAGCTC 1 cut(s) 271
Psp5II RGGWCCY 3 cut(s) 31, 235, 394
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 236, 396
PspPI GGNCC 4 cut(s) 31, 129, 235, 394
PspPPI RGGWCCY 3 cut(s) 31, 235, 394
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 63, 546
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 2 cut(s) 101, 275
RsaNI GTAC 2 cut(s) 100, 274
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 555, 927
SatI GCNGC 3 cut(s) 456, 500, 933
Sau3AI GATC 7 cut(s) 63, 153, 372, 432, 546, 639, 834
Sau96I GGNCC 4 cut(s) 31, 129, 235, 394
ScrFI CCNGG 2 cut(s) 737, 790
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 497
SinI GGWCC 3 cut(s) 31, 235, 394
SmlI CTYRAG 3 cut(s) 245, 341, 926
SmoI CTYRAG 3 cut(s) 245, 341, 926
Sse9I AATT 5 cut(s) 124, 138, 473, 709, 914
SsiI CCGC 6 cut(s) 112, 303, 449, 455, 509, 933
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 735, 788
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 3 cut(s) 17, 82, 847
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 108, 213, 371, 431, 519, 674
TasI AATT 5 cut(s) 124, 138, 473, 709, 914
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 458, 935
TfiI GAWTC 3 cut(s) 379, 541, 577
Tru1I TTAA 2 cut(s) 555, 927
Tru9I TTAA 2 cut(s) 555, 927
TscAI CASTG 2 cut(s) 85, 327
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 1 cut(s) 499
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 1 cut(s) 794
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 2 cut(s) 85, 327
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 3 cut(s) 31, 235, 394
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 2 cut(s) 473, 709
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.