Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

58813156 .. 58814190

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG389100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGCAAAGGTGGCTCTCTCAGCGAAGGCGTCATCAAGAAGATCCTCCTCTCCTACACCTACGTCGCCATTTGGATCTTCCTCAGCTTCACCGTCATCGTCTACAACAAGTACATCCTCGACAAGAAGATGTACAACTGGCCCTTCCCTATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCGGCCTCGCCTTCCTCCTCGTCCGCGTCTTCAAGTTAGTCGAGCCCATTACCATGACCCGAGAAGTCTACCTCTCCTCCGTCGTCCCCATCGGAGCCCTCTACTCCCTCTCCCTCTGGCTCTCTAACTCCGCTTACATCTATCTCTCTGTCTCCTTCATCCAAATGCTCAAGGCTCTCATGCCTGTGGCCGTCTACTCCATTGGGGTGTCGTTTAAGAAGGAGACGTTTAAGACTGACACGATGGTCAACATGCTCTCGATCTCCGTCGGCGTGGCCATTGCGGCTTATGGGGAGGCCAGATTCGACACCTGGGGTGTGATTCTGCAACTGGGCGCGGTTGTTTTCGAGGCCACGAGGCTTGTGTTGATCCAAATCCTGTTGACATCTAAAGGGATCACCTTGAATCCCATTACCTCTTTGTACTATGTGGCTCCTTGTTGCTTGGCTTTTCTGTTGGTGCCTTGGATCTATGTGGAGTACCCAACACTGAGGGACACCTCCAGTTTCCATTTCGATTACGTGATTTTCGGGACCAATTCCTTCTGTGCGTTCGCTTTGAATCTTGCTGTGTTCTTGCTCGTGGGGAAGACCTCGGCTTTGACCATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCAATCAATCTGGTGGGTTATGGCCTTGCGTTTTTGGGGGTTGCGTATTACAATCACTCCAAATTGCAGGCTCTGAAGGCCAAGGAGGCGCAGAAGAAGGTGCCTCCGGCGGATGAGGAGGCGAATAGTAGGCTGCTGGAGGCTGAAGGTCAAGGACGGGAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

344

Amino Acids

38.26

Weight (kDa)

8.93

Isoelectric Point (pI)

21.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	3.3e-23	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	643, 964
AccI	GTMKAC	3 cut(s)	102, 252, 378
AccII	CGCG	2 cut(s)	210, 521
AciI	CCGC	6 cut(s)	208, 315, 467, 521, 800, 974
AclWI	GGATC	6 cut(s)	37, 83, 160, 547, 587, 659
AcoI	YGGCCR	2 cut(s)	372, 459
AcuI	CTGAAG	2 cut(s)	959, 1029
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	4 cut(s)	113, 134, 608, 665
AfiI	CCNNNNNNNGG	1 cut(s)	837
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	217, 589, 745
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	340, 401
AlwI	GGATC	6 cut(s)	37, 83, 160, 547, 587, 659
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	8 cut(s)	140, 187, 372, 459, 480, 534, 886, 942
ApeKI	GCWGC	1 cut(s)	997
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AspLEI	GCGC	3 cut(s)	185, 521, 955
AspS9I	GGNCC	2 cut(s)	141, 717
AsuHPI	GGTGA	4 cut(s)	82, 151, 574, 820
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	461
BanI	GGYRCC	2 cut(s)	643, 964
BanII	GRGCYC	2 cut(s)	231, 283
BauI	CACGAG	2 cut(s)	538, 764
BbsI	GAAGAC	2 cut(s)	205, 779
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	984
BccI	CCATC	2 cut(s)	281, 421
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	496
BclI	TGATCA	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	340, 401
BglI	GCCNNNNNGGC	2 cut(s)	467, 950
BisI	GCNGC	2 cut(s)	468, 998
BlsI	GCNGC	2 cut(s)	469, 999
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	717
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	141, 717
BmiI	GGNNCC	5 cut(s)	280, 618, 645, 718, 966
BmrFI	CCNGG	1 cut(s)	496
BmrI	ACTGGG	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	205, 779
BpmI	CTGGAG	2 cut(s)	670, 1022
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	706
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	495, 647, 777, 945
BsaXI	ACNNNNNCTCC	6 cut(s)	245, 275, 278, 308, 905, 935
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	143, 519, 687
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	4 cut(s)	495, 647, 777, 945
BseGI	GGATG	3 cut(s)	114, 342, 982
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	34, 97, 665
BseNI	ACTGG	3 cut(s)	143, 519, 687
BseRI	GAGGAG	4 cut(s)	38, 191, 250, 995
BseXI	GCAGC	1 cut(s)	984
Bsh1236I	CGCG	2 cut(s)	210, 521
BshFI	GGCC	8 cut(s)	142, 189, 374, 461, 482, 536, 888, 944
BshNI	GGYRCC	2 cut(s)	643, 964
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	186, 971
BslFI	GGGAC	3 cut(s)	254, 692, 730
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	2 cut(s)	340, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	3 cut(s)	254, 692, 730
BsnI	GGCC	8 cut(s)	142, 189, 374, 461, 482, 536, 888, 944
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	231, 283
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
BspACI	CCGC	6 cut(s)	208, 315, 467, 521, 800, 974
BspANI	GGCC	8 cut(s)	142, 189, 374, 461, 482, 536, 888, 944
BspCNI	CTCAG	3 cut(s)	33, 96, 666
BspFNI	CGCG	2 cut(s)	210, 521
BspLI	GGNNCC	5 cut(s)	280, 618, 645, 718, 966
BspPI	GGATC	6 cut(s)	37, 83, 160, 547, 587, 659
BspT107I	GGYRCC	2 cut(s)	643, 964
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	143, 519, 687
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	495, 647, 777, 945
BssMI	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	2 cut(s)	538, 764
BssT1I	CCWWGG	2 cut(s)	647, 945
Bst2BI	CACGAG	2 cut(s)	538, 764
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	94, 859
BstACI	GRCGYC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	706
BstC8I	GCNNGC	2 cut(s)	187, 933
BstDEI	CTNAG	3 cut(s)	20, 83, 674
BstF5I	GGATG	3 cut(s)	114, 342, 982
BstFNI	CGCG	2 cut(s)	210, 521
BstHHI	GCGC	3 cut(s)	185, 521, 955
BstKTI	GATC	8 cut(s)	45, 78, 168, 447, 555, 582, 654, 849
BstMAI	GTCTC	2 cut(s)	340, 401
BstMBI	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	2 cut(s)	175, 439
BstSCI	CCNGG	1 cut(s)	494
BstUI	CGCG	2 cut(s)	210, 521
BstV1I	GCAGC	1 cut(s)	984
BstV2I	GAAGAC	2 cut(s)	205, 779
BstX2I	RGATCY	3 cut(s)	42, 75, 651
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	3 cut(s)	42, 75, 651
BsuRI	GGCC	8 cut(s)	142, 189, 374, 461, 482, 536, 888, 944
BtsCI	GGATG	3 cut(s)	114, 342, 982
BtsIMutI	CAGTG	2 cut(s)	671, 855
Cac8I	GCNNGC	2 cut(s)	187, 933
CaiI	CAGNNNCTG	1 cut(s)	937
CfoI	GCGC	3 cut(s)	185, 521, 955
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	141, 717
CseI	GACGC	2 cut(s)	19, 199
Csp6I	GTAC	4 cut(s)	112, 133, 607, 664
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	6 cut(s)	163, 172, 238, 364, 436, 790
CviQI	GTAC	4 cut(s)	112, 133, 607, 664
DdeI	CTNAG	3 cut(s)	20, 83, 674
DpnI	GATC	8 cut(s)	44, 77, 167, 446, 554, 581, 653, 848
DpnII	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	372, 459
EciI	GGCGGA	1 cut(s)	989
Eco130I	CCWWGG	2 cut(s)	647, 945
Eco24I	GRGCYC	2 cut(s)	231, 283
Eco47I	GGWCC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	959, 1029
Eco88I	CYCGRG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	647, 945
EcoT38I	GRGCYC	2 cut(s)	231, 283
ErhI	CCWWGG	2 cut(s)	647, 945
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	6 cut(s)	166, 175, 241, 367, 439, 793
FaqI	GGGAC	3 cut(s)	254, 692, 730
FatI	CATG	6 cut(s)	162, 171, 237, 363, 435, 789
FauI	CCCGC	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	3 cut(s)	102, 252, 378
Fnu4HI	GCNGC	2 cut(s)	468, 998
FokI	GGATG	3 cut(s)	101, 329, 989
FriOI	GRGCYC	2 cut(s)	231, 283
Fsp4HI	GCNGC	2 cut(s)	468, 998
GlaI	GCGC	3 cut(s)	184, 520, 954
GluI	GCNGC	2 cut(s)	468, 998
GsuI	CTGGAG	2 cut(s)	670, 1022
HaeIII	GGCC	8 cut(s)	142, 189, 374, 461, 482, 536, 888, 944
HapII	CCGG	2 cut(s)	186, 971
HgaI	GACGC	2 cut(s)	19, 199
HhaI	GCGC	3 cut(s)	185, 521, 955
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	166, 175, 241, 367, 439, 793
Hin6I	GCGC	3 cut(s)	183, 519, 953
HinP1I	GCGC	3 cut(s)	183, 519, 953
HincII	GTYRAC	2 cut(s)	433, 567
HindII	GTYRAC	2 cut(s)	433, 567
HinfI	GANTC	4 cut(s)	486, 505, 589, 745
HpaII	CCGG	2 cut(s)	186, 971
HphI	GGTGA	4 cut(s)	82, 151, 574, 820
Hpy166II	GTNNAC	5 cut(s)	103, 253, 379, 433, 567
Hpy188I	TCNGA	2 cut(s)	278, 939
Hpy188III	TCNNGA	4 cut(s)	37, 442, 715, 823
Hpy8I	GTNNAC	5 cut(s)	103, 253, 379, 433, 567
Hpy99I	CGWCG	3 cut(s)	68, 269, 455
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	3 cut(s)	63, 410, 705
HpyCH4V	TGCA	2 cut(s)	511, 931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
HpyF3I	CTNAG	3 cut(s)	20, 83, 674
HpySE526I	ACGT	3 cut(s)	63, 410, 705
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	166, 175, 241, 367, 439, 793
HspAI	GCGC	3 cut(s)	183, 519, 953
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
LmnI	GCTCC	2 cut(s)	278, 622
Lsp1109I	GCAGC	1 cut(s)	984
MaeII	ACGT	3 cut(s)	63, 410, 705
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	8 cut(s)	44, 77, 167, 446, 554, 581, 653, 848
MboI	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
MboII	GAAGA	6 cut(s)	52, 70, 139, 205, 784, 970
MflI	RGATCY	3 cut(s)	42, 75, 651
MhlI	GDGCHC	2 cut(s)	231, 283
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	721, 926
MluNI	TGGCCA	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	2 cut(s)	399, 414
MslI	CAYNNNNRTG	5 cut(s)	236, 347, 368, 389, 794
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	2 cut(s)	186, 971
MspR9I	CCNGG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	496
MvnI	CGCG	2 cut(s)	210, 521
MwoI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
NaeI	GCCGGC	1 cut(s)	187
NdeII	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	6 cut(s)	166, 175, 241, 367, 439, 793
NlaIV	GGNNCC	5 cut(s)	280, 618, 645, 718, 966
NmeAIII	GCCGAG	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	859
NspI	RCATGY	2 cut(s)	175, 439
PciI	ACATGT	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	486, 505, 589, 745
PkrI	GCNGC	2 cut(s)	469, 999
Ppu21I	YACGTR	1 cut(s)	706
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	5 cut(s)	280, 618, 645, 718, 966
PspPI	GGNCC	2 cut(s)	141, 717
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	3 cut(s)	42, 75, 651
RsaI	GTAC	4 cut(s)	113, 134, 608, 665
RsaNI	GTAC	4 cut(s)	112, 133, 607, 664
RseI	CAYNNNNRTG	5 cut(s)	236, 347, 368, 389, 794
SaqAI	TTAA	2 cut(s)	399, 414
SatI	GCNGC	2 cut(s)	468, 998
Sau3AI	GATC	8 cut(s)	42, 75, 165, 444, 552, 579, 651, 846
Sau96I	GGNCC	2 cut(s)	141, 717
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	2 cut(s)	231, 283
SinI	GGWCC	1 cut(s)	717
SmiMI	CAYNNNNRTG	5 cut(s)	236, 347, 368, 389, 794
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	721, 926
SsiI	CCGC	6 cut(s)	208, 315, 467, 521, 800, 974
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	2 cut(s)	647, 945
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	3 cut(s)	66, 413, 708
TaqI	TCGA	6 cut(s)	120, 225, 443, 489, 531, 699
TasI	AATT	2 cut(s)	721, 926
TatI	WGTACW	3 cut(s)	111, 132, 606
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	486, 505, 589, 745
Tru1I	TTAA	2 cut(s)	399, 414
Tru9I	TTAA	2 cut(s)	399, 414
TscAI	CASTG	2 cut(s)	678, 862
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	1 cut(s)	997
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	331, 806
TspGWI	ACGGA	2 cut(s)	253, 439
TspRI	CASTG	2 cut(s)	678, 862
VpaK11BI	GGWCC	1 cut(s)	717
XceI	RCATGY	2 cut(s)	175, 439
XmiI	GTMKAC	3 cut(s)	102, 252, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.