Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

58780373 .. 58781494

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGCCAAGCACGATCTGGAAGGCGATCGGAGTCGTTAAGGACCAGACGAGCATTGGAATTGCGAAGGTCGCCAGCAACGTACATGGTGCGGGACCTGGAGGTCGCCATCGTGAAGGCCACCAGCCACGAGGACGAGCTGGCTGGCGAGAAGTACATCCGGGAGATCCTCCAGCTGACGTCATACTCCCAGGGATACGTCCACACGTGCGTGTCGACGGTGTCGAAGCGATTAGGGAAGACGCGCGACTGGATCGTGGCTCTCAAAGCGTTGATGCTGGTGCACCGCCTCGTGAACGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

101

Amino Acids

10.77

Weight (kDa)

10.65

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	102
AatII	GACGTC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	2 cut(s)	245, 247
AciI	CCGC	2 cut(s)	92, 287
AclWI	GGATC	2 cut(s)	161, 261
AcvI	CACGTG	1 cut(s)	208
AcyI	GRCGYC	2 cut(s)	5, 180
AfaI	GTAC	2 cut(s)	84, 156
AflIII	ACRYGT	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	97, 190
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	140, 176
AluI	AGCT	2 cut(s)	140, 176
Alw21I	GWGCWC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	2 cut(s)	161, 261
AoxI	GGCC	1 cut(s)	118
ApaLI	GTGCAC	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	7, 247
AspS9I	GGNCC	2 cut(s)	43, 95
AsuC2I	CCSGG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	43, 95
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	2 cut(s)	129, 291
BbrPI	CACGTG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	286
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	99, 192
BciVI	GTATCC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	189
Bme1390I	CCNGG	3 cut(s)	99, 162, 192
Bme18I	GGWCC	2 cut(s)	43, 95
BmgT120I	GGNCC	2 cut(s)	43, 95
BmiI	GGNNCC	2 cut(s)	6, 96
BmrFI	CCNGG	3 cut(s)	99, 162, 192
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	120, 156
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	208
BsaHI	GRCGYC	2 cut(s)	5, 180
BsaJI	CCNNGG	2 cut(s)	190, 191
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	99, 192
BseDI	CCNNGG	2 cut(s)	190, 191
BseGI	GGATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	286
Bsh1236I	CGCG	2 cut(s)	245, 247
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	15, 27, 166, 253
BspACI	CCGC	2 cut(s)	92, 287
BspANI	GGCC	1 cut(s)	120
BspFNI	CGCG	2 cut(s)	245, 247
BspLI	GGNNCC	2 cut(s)	6, 96
BspPI	GGATC	2 cut(s)	161, 261
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	190, 191
BssMI	GATC	4 cut(s)	15, 27, 166, 253
BssNI	GRCGYC	2 cut(s)	5, 180
BssSI	CACGAG	2 cut(s)	129, 291
Bst2BI	CACGAG	2 cut(s)	129, 291
Bst2UI	CCWGG	2 cut(s)	99, 192
Bst4CI	ACNGT	2 cut(s)	221, 303
BstACI	GRCGYC	2 cut(s)	5, 180
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	76, 142, 146
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	2 cut(s)	245, 247
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 247
BstKTI	GATC	4 cut(s)	18, 30, 169, 256
BstMBI	GATC	4 cut(s)	15, 27, 166, 253
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 267
BstNI	CCWGG	2 cut(s)	99, 192
BstSCI	CCNGG	3 cut(s)	97, 160, 190
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	2 cut(s)	245, 247
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	76, 142, 146
CfoI	GCGC	2 cut(s)	7, 247
Cfr13I	GGNCC	2 cut(s)	43, 95
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	83, 155
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	120, 127, 140, 144, 176, 261
CviKI_1	RGCY	6 cut(s)	120, 127, 140, 144, 176, 261
CviQI	GTAC	2 cut(s)	83, 155
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	17, 29, 168, 255
DpnII	GATC	4 cut(s)	15, 27, 166, 253
DrdI	GACNNNNNNGTC	1 cut(s)	102
DseDI	GACNNNNNNGTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	43, 95
Eco72I	CACGTG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	97, 190
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	89
FaiI	YATR	2 cut(s)	87, 185
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	85
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	6, 246
GsuI	CTGGAG	2 cut(s)	120, 156
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	7, 247
Hin1I	GRCGYC	2 cut(s)	5, 180
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	5, 245
HinP1I	GCGC	2 cut(s)	5, 245
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	4 cut(s)	203, 217, 284, 296
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	3 cut(s)	19, 113, 293
Hpy8I	GTNNAC	4 cut(s)	203, 217, 284, 296
Hpy99I	CGWCG	2 cut(s)	221, 303
HpyAV	CCTTC	3 cut(s)	16, 61, 110
HpyCH4III	ACNGT	2 cut(s)	221, 303
HpyCH4IV	ACGT	4 cut(s)	81, 180, 199, 207
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 267
HpySE526I	ACGT	4 cut(s)	81, 180, 199, 207
Hsp92I	GRCGYC	2 cut(s)	5, 180
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	5, 245
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	15, 27, 166, 253
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	4 cut(s)	81, 180, 199, 207
MalI	GATC	4 cut(s)	17, 29, 168, 255
MboI	GATC	4 cut(s)	15, 27, 166, 253
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	60
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	95, 125, 180, 300
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	99, 162, 192
MvaI	CCWGG	2 cut(s)	99, 192
MvnI	CGCG	2 cut(s)	245, 247
MwoI	GCNNNNNNNGC	2 cut(s)	71, 267
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	15, 27, 166, 253
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	6, 96
OliI	CACNNNNGTG	1 cut(s)	210
PasI	CCCWGGG	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 213, 222
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	160
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	41
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	97, 190
PspCI	CACGTG	1 cut(s)	208
PspGI	CCWGG	2 cut(s)	97, 190
PspN4I	GGNNCC	2 cut(s)	6, 96
PspPI	GGNCC	2 cut(s)	43, 95
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	84, 156
RsaNI	GTAC	2 cut(s)	83, 155
RseI	CAYNNNNRTG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	4 cut(s)	15, 27, 166, 253
Sau96I	GGNCC	2 cut(s)	43, 95
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	3 cut(s)	99, 162, 192
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	9 cut(s)	72, 84, 100, 106, 142, 178, 183, 202, 210
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	43, 95
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	92, 287
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	3 cut(s)	97, 160, 190
TaaI	ACNGT	2 cut(s)	221, 303
TaiI	ACGT	4 cut(s)	84, 183, 202, 210
TaqI	TCGA	2 cut(s)	216, 225
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	43, 95
XcmI	CCANNNNNNNNNTGG	2 cut(s)	15, 53
XmiI	GTMKAC	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.