RchiOBHm_Chr2g0085641

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001025
Physical Location & Seq
Reverse (-)
978337 .. 979527
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46119

Sequence Viewer

Length: 654 bp
ATGAAAAATGACCAAAATGTTCAGTTTGATGAAATATTTACGCGTATGCCACTGACCAAAATCTCTCTCTCTCTTCGCCGTTTTACCCATTCGCATCCTAATCTAAGTCTGACCCGCCGAATCCCTCGTCGTCTGCAACCTTCTCAAGAGCCACTTCCGTCCCTTTCCTTAGCTCGGCTTTCGATCTCGTTCGGTGTGGCAGTTGCAACTTATGGGGAGGCGAGATTTAACTCGTGGGAAGTGAACTTGCAGCTACTGGCGGTGGGTTTCGAGGCGACGAGGTTGGTTCTTATTCAGATCTTGCTTAATGCTAAGGGTATTAGCTTGAATCCGATTACTTCTCTTTATTATGTTGCCTCGTATTGCTTTGCGTTCCTGTGCATTCCTTGGATTGTTGTGGAGTTCCCCAATTTGCTCTGTGCTTTTGCGTTGAACCTGGCTGTGTTTCTGCTATTGGGGAAGACTTCGGCTTTGACAATGAATGTTGCCGGGGTTGTGAAAAATTGGCTCCTGATTACGTTTTCGTGGTCGGTGATTAAGGATACCGTGACGCCAATCAATCTGATTGGGCGCTTAAGGCAGGACAATGTGGAGGCTGGGAAGCTGTTGGAGGAGAGAGATAAGGATGGAAAGAAGAACGAAACTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

9.4

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 2 cut(s) 115, 260
AcyI GRCGYC 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 174
AflII CTTAAG 1 cut(s) 574
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 328, 433
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 4 cut(s) 173, 253, 324, 604
AluI AGCT 4 cut(s) 173, 253, 324, 604
AlwNI CAGNNNCTG 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 250
ArsI GACNNNNNNTTYG 4 cut(s) 112, 144, 454, 486
AspLEI GCGC 1 cut(s) 573
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 544
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 620
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 535
BcnI CCSGG 1 cut(s) 490
BfoI RGCGCY 1 cut(s) 574
BfrI CTTAAG 1 cut(s) 574
BfuI GTATCC 1 cut(s) 535
BglII AGATCT 1 cut(s) 297
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 437, 490
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 2 cut(s) 437, 490
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 467
Bpu10I CCTNAGC 2 cut(s) 169, 312
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 386, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 386, 489
BseGI GGATG 2 cut(s) 94, 631
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 183, 297
BspACI CCGC 2 cut(s) 115, 260
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 509
BspTI CTTAAG 1 cut(s) 574
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 386, 489
BssMI GATC 2 cut(s) 183, 297
BssNI GRCGYC 1 cut(s) 551
BssSI CACGAG 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 551
BstAFI CTTAAG 1 cut(s) 574
BstDEI CTNAG 4 cut(s) 104, 169, 312, 645
BstF5I GGATG 2 cut(s) 94, 631
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 2 cut(s) 186, 300
BstMBI GATC 2 cut(s) 183, 297
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 435, 488
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 94, 631
BtsIMutI CAGTG 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 1 cut(s) 573
CseI GACGC 1 cut(s) 559
DdeI CTNAG 4 cut(s) 104, 169, 312, 645
DpnI GATC 2 cut(s) 185, 299
DpnII GATC 2 cut(s) 183, 297
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaiI YATR 3 cut(s) 47, 213, 351
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 145
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 2 cut(s) 81, 638
Fsp4HI GCNGC 1 cut(s) 251
GlaI GCGC 1 cut(s) 572
GluI GCNGC 1 cut(s) 251
GsaI CCCAGC 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 574
HapII CCGG 1 cut(s) 489
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 1 cut(s) 551
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 2 cut(s) 120, 328
HpaII CCGG 1 cut(s) 489
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 111, 297, 333, 564
Hpy188III TCNNGA 3 cut(s) 146, 511, 647
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 132, 280
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 4 cut(s) 136, 206, 250, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 4 cut(s) 104, 169, 312, 645
HpySE526I ACGT 1 cut(s) 518
Hsp92I GRCGYC 1 cut(s) 551
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 183, 297
LmnI GCTCC 1 cut(s) 513
LpnPI CCDG 9 cut(s) 242, 389, 422, 449, 502, 524, 566, 582, 632
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 547
MalI GATC 2 cut(s) 185, 299
MboI GATC 2 cut(s) 183, 297
MboII GAAGA 3 cut(s) 65, 472, 646
MflI RGATCY 1 cut(s) 297
MluCI AATT 2 cut(s) 409, 502
MluI ACGCGT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 7 cut(s) 135, 211, 265, 273, 367, 586, 604
MseI TTAA 4 cut(s) 228, 306, 537, 575
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 437, 490
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 577
NciI CCSGG 1 cut(s) 490
NdeII GATC 2 cut(s) 183, 297
NlaIV GGNNCC 1 cut(s) 509
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 547
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 120, 328
PkrI GCNGC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 297
SaqAI TTAA 4 cut(s) 228, 306, 537, 575
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 2 cut(s) 183, 297
ScrFI CCNGG 2 cut(s) 437, 490
SetI ASST 8 cut(s) 142, 175, 255, 284, 326, 438, 521, 606
SfaNI GCATC 1 cut(s) 103
SmlI CTYRAG 2 cut(s) 144, 574
SmoI CTYRAG 2 cut(s) 144, 574
Sse9I AATT 2 cut(s) 409, 502
SsiI CCGC 2 cut(s) 115, 260
SspI AATATT 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 435, 488
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 1 cut(s) 521
TaqI TCGA 2 cut(s) 182, 270
TasI AATT 2 cut(s) 409, 502
TfiI GAWTC 2 cut(s) 120, 328
Tru1I TTAA 4 cut(s) 228, 306, 537, 575
Tru9I TTAA 4 cut(s) 228, 306, 537, 575
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 3 cut(s) 17, 45, 494
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 57
Vha464I CTTAAG 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.