Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

50085397 .. 50086226

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGCCGAGCACGATCCGGAAGGCAATCGGAGCCGTCAAGGACCAAACAAGCATCGAAATCGCGAAGGTCGCCAGCAACATGGCTCCGGACCTGGAGGTCGCCATCGTGAAGGCCACCAGCCACAAGGACGAGCCGACCAGCGAGAAGTACATCTGGGAGATCCTCCAGCTGACGTCATACTCTCGGGGATACGTCCATGCGTGCGTGTCTGCGGTGTTGAAGCGACTGGGGAAGACGCGCGACTGGATCGTGGCGCTCAAGGCGTTGATACTGGTGCACCACCTCATGAACGACGGCGACCCTACCTCGGCTTTGACGATGAATGTGGCTGGTGTGGTGAAAGATTGGTTCTTGATTGCCTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCAATCAATTTGGTGGGTTATGGCCTTGCGTTTTTGGGGGTTGCGTATTACAATCACTTGAAATTGCACGCTCTAAAGGCCAAGGAGGTGCAGAAGAAGGTGCTTCCAGGGGATGAGGAGGTGAATAATAAGCTGTTGGAGGCTGAAGGTGAAGGACAGGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

7.82

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANTH	PF07651	31 - 104	1e-22	ANTH domain
ENTH	PF01417	31 - 103	6.1e-06	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	65, 241, 243
AccIII	TCCGGA	2 cut(s)	18, 88
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	3 cut(s)	10, 157, 257
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	2 cut(s)	5, 176
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	310, 369
AgsI	TTSAA	2 cut(s)	223, 457
AjnI	CCWGG	2 cut(s)	93, 502
AluBI	AGCT	2 cut(s)	172, 529
AluI	AGCT	2 cut(s)	172, 529
Alw21I	GWGCWC	2 cut(s)	14, 282
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	3 cut(s)	10, 157, 257
Ama87I	CYCGRG	1 cut(s)	186
Aor13HI	TCCGGA	2 cut(s)	18, 88
AoxI	GGCC	3 cut(s)	114, 418, 474
ApaLI	GTGCAC	1 cut(s)	278
AspLEI	GCGC	3 cut(s)	7, 243, 259
AspS9I	GGNCC	2 cut(s)	43, 91
AsuHPI	GGTGA	3 cut(s)	352, 529, 557
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	43, 91
BaeGI	GKGCMC	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	14, 282
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	20, 313
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	95, 504
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	378
BfoI	RGCGCY	2 cut(s)	8, 260
BfuI	GTATCC	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	95, 504
Bme18I	GGWCC	2 cut(s)	43, 91
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	43, 91
BmiI	GGNNCC	3 cut(s)	6, 34, 87
BmrFI	CCNGG	2 cut(s)	95, 504
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	2 cut(s)	116, 152
BpuEI	CTTGAG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	5, 176
BsaJI	CCNNGG	3 cut(s)	309, 477, 503
BsaWI	WCCGGW	2 cut(s)	18, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 369
Bse1I	ACTGG	3 cut(s)	234, 251, 279
BseAI	TCCGGA	2 cut(s)	18, 88
BseBI	CCWGG	2 cut(s)	95, 504
BseDI	CCNNGG	3 cut(s)	309, 477, 503
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	310, 369
BseNI	ACTGG	3 cut(s)	234, 251, 279
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	3 cut(s)	65, 241, 243
BshFI	GGCC	3 cut(s)	116, 420, 476
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	14, 282
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	19, 89
BslI	CCNNNNNNNGG	2 cut(s)	310, 369
BsnI	GGCC	3 cut(s)	116, 420, 476
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	14, 282
Bsp13I	TCCGGA	2 cut(s)	18, 88
Bsp143I	GATC	4 cut(s)	15, 162, 249, 378
Bsp68I	TCGCGA	1 cut(s)	65
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	116, 420, 476
BspEI	TCCGGA	2 cut(s)	18, 88
BspFNI	CGCG	3 cut(s)	65, 241, 243
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	6, 34, 87
BspPI	GGATC	3 cut(s)	10, 157, 257
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	234, 251, 279
BssECI	CCNNGG	3 cut(s)	309, 477, 503
BssMI	GATC	4 cut(s)	15, 162, 249, 378
BssNI	GRCGYC	2 cut(s)	5, 176
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	95, 504
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	5, 176
BstC8I	GCNNGC	3 cut(s)	76, 205, 465
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	3 cut(s)	65, 241, 243
BstH2I	RGCGCY	2 cut(s)	8, 260
BstHHI	GCGC	3 cut(s)	7, 243, 259
BstKTI	GATC	4 cut(s)	18, 165, 252, 381
BstMBI	GATC	4 cut(s)	15, 162, 249, 378
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 71, 263, 473
BstNI	CCWGG	2 cut(s)	95, 504
BstSCI	CCNGG	2 cut(s)	93, 502
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	3 cut(s)	65, 241, 243
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	116, 420, 476
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	387
BtuMI	TCGCGA	1 cut(s)	65
Cac8I	GCNNGC	3 cut(s)	76, 205, 465
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	3 cut(s)	7, 243, 259
Cfr13I	GGNCC	2 cut(s)	43, 91
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	82, 200, 289
CviQI	GTAC	1 cut(s)	151
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	17, 164, 251, 380
DpnII	GATC	4 cut(s)	15, 162, 249, 378
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	43, 91
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	93, 502
EcoT14I	CCWWGG	1 cut(s)	477
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	85, 203, 292
FaiI	YATR	5 cut(s)	83, 181, 201, 290, 417
FatI	CATG	3 cut(s)	81, 199, 288
FbaI	TGATCA	1 cut(s)	378
FokI	GGATG	1 cut(s)	521
GlaI	GCGC	3 cut(s)	6, 242, 258
GsuI	CTGGAG	2 cut(s)	116, 152
HaeII	RGCGCY	2 cut(s)	8, 260
HaeIII	GGCC	3 cut(s)	116, 420, 476
HapII	CCGG	2 cut(s)	19, 89
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	3 cut(s)	7, 243, 259
Hin1I	GRCGYC	2 cut(s)	5, 176
Hin1II	CATG	3 cut(s)	85, 203, 292
Hin6I	GCGC	3 cut(s)	5, 241, 257
HinP1I	GCGC	3 cut(s)	5, 241, 257
HpaII	CCGG	2 cut(s)	19, 89
HphI	GGTGA	3 cut(s)	352, 529, 557
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	6 cut(s)	19, 64, 89, 109, 289, 355
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	8 cut(s)	16, 61, 106, 373, 487, 536, 542, 551
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	176, 195
HpyCH4V	TGCA	3 cut(s)	280, 463, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 71, 263, 473
HpySE526I	ACGT	2 cut(s)	176, 195
Hsp92I	GRCGYC	2 cut(s)	5, 176
Hsp92II	CATG	3 cut(s)	85, 203, 292
HspAI	GCGC	3 cut(s)	5, 241, 257
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	2 cut(s)	18, 88
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	4 cut(s)	15, 162, 249, 378
LmnI	GCTCC	2 cut(s)	32, 91
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	2 cut(s)	176, 195
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	4 cut(s)	17, 164, 251, 380
MboI	GATC	4 cut(s)	15, 162, 249, 378
MboII	GAAGA	2 cut(s)	247, 502
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	14, 282
MluCI	AATT	2 cut(s)	403, 458
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	91, 176, 296, 319, 475, 505, 508, 529
MroI	TCCGGA	2 cut(s)	18, 88
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	19, 89
MspR9I	CCNGG	2 cut(s)	95, 504
MvaI	CCWGG	2 cut(s)	95, 504
MvnI	CGCG	3 cut(s)	65, 241, 243
MwoI	GCNNNNNNNGC	4 cut(s)	32, 71, 263, 473
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	15, 162, 249, 378
NlaIII	CATG	3 cut(s)	85, 203, 292
NlaIV	GGNNCC	3 cut(s)	6, 34, 87
NmeAIII	GCCGAG	2 cut(s)	33, 290
NmuCI	GTSAC	1 cut(s)	391
NruI	TCGCGA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	93, 502
PspGI	CCWGG	2 cut(s)	93, 502
PspN4I	GGNNCC	3 cut(s)	6, 34, 87
PspPI	GGNCC	2 cut(s)	43, 91
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	172
RruI	TCGCGA	1 cut(s)	65
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
Sau3AI	GATC	4 cut(s)	15, 162, 249, 378
Sau96I	GGNCC	2 cut(s)	43, 91
ScrFI	CCNGG	2 cut(s)	95, 504
SduI	GDGCHC	2 cut(s)	14, 282
SfaNI	GCATC	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	43, 91
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	403, 458
SsiI	CCGC	1 cut(s)	215
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	93, 502
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	179, 198
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	403, 458
TatI	WGTACW	1 cut(s)	150
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	305, 338
TspRI	CASTG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	43, 91
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.