Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

22745171 .. 22747265

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGCAAAGGTGGCTCCCTGAGCGAAGGCGTGATCAAGAAGATCCTCCTCTCCTACACCTACGTCGCCATATGGATCTTCCTCAGCTTCACCGTCATCGTCTACAACAAGTACATCCTCGACAAGAAGATGTACAACTGGCCCTTCCCCATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCGCCCTCGCCTTCCTCCTCGTCCGCGTCTTCAAGCTCGTCGAACCCATCACCATGTCACGTGACGTCTACCTCTCCTCCGTCGTCCCCATCGGCGCCCTCTACTCCCTCTCCCTCTGGCTCTCCAACTCGGCCTACATCTACCTCTCCGTCTCCTTCATTCAAATGCTCAAGGCCCTCATGCCCGTCGCCGTCTACTCCATCGGCGTCTCCTTCAAAAAAGAAACCTTCAAAACCGACACCATGGTCAACATGCTCTCCATCTCCTTCGGCGTCGCCATCGCCGCCTACGGAGAAGCCCGCTTCGACACGTGGGGTGTGATCCTCCAACTCGGAGCGGTTGTCTTCGAAGCCACTAGACTTGTCTTGATCCAAATCCTACTCACATCCAAAGGCATCACGTTGAATCCCATAACTTCCTTGTACTATGTTGCTCCGTGTTGCTTGGCTTTCTTGTTGGTGCCGTGGATCTACGTGGAGTACCCGACATTGAGAGACACGTCGAGTTTTCATCTCGATTATGTGATCTTTGGAACTAATTCGCTCTGTGCTTTCGCGTTAAATCTTGCTGTGTTCTTGCTCGTGGGGAAGACCTCGGCTTTGACGATGAATGTGGCGGGTGTGGTGAAGGATTGGCTCTTGATTGCGTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCGATCAATCTAGTGGGTTACGGCCTTGCGTTTTTAGGGGTTGCGTATTACAATCACTCGAAATTGCAGGCATTGAAGGCCAAGGAGGCGCAGAAGAAGGTGCCGAATGCGGATGAGGAGGCGAATAATAGGCTCTTGGAGGCTGAAAGTGATGGACGGGAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

345

Amino Acids

38.28

Weight (kDa)

8.81

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	1.4e-23	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	3 cut(s)	278, 643, 964
AccBSI	CCGCTC	1 cut(s)	521
AccI	GTMKAC	3 cut(s)	102, 252, 378
AccII	CGCG	2 cut(s)	210, 740
AciI	CCGC	7 cut(s)	186, 208, 468, 484, 521, 800, 974
AclWI	GGATC	6 cut(s)	37, 83, 160, 499, 547, 659
AcvI	CACGTG	2 cut(s)	245, 495
AcyI	GRCGYC	4 cut(s)	249, 279, 390, 456
AfaI	GTAC	4 cut(s)	113, 134, 608, 665
AflIII	ACRYGT	3 cut(s)	171, 492, 681
AgsI	TTSAA	6 cut(s)	217, 347, 400, 415, 589, 940
AjiI	CACGTC	1 cut(s)	684
AluBI	AGCT	2 cut(s)	87, 220
AluI	AGCT	2 cut(s)	87, 220
Alw26I	GTCTC	3 cut(s)	340, 397, 672
AlwI	GGATC	6 cut(s)	37, 83, 160, 499, 547, 659
AoxI	GGCC	5 cut(s)	140, 315, 357, 886, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
Asp700I	GAANNNNTTC	1 cut(s)	721
AspLEI	GCGC	3 cut(s)	185, 281, 955
AspS9I	GGNCC	2 cut(s)	141, 358
AsuHPI	GGTGA	4 cut(s)	82, 151, 226, 820
AsuII	TTCGAA	1 cut(s)	531
BanI	GGYRCC	3 cut(s)	278, 643, 964
BauI	CACGAG	1 cut(s)	764
BbrPI	CACGTG	2 cut(s)	245, 495
BbsI	GAAGAC	3 cut(s)	205, 520, 779
BbvCI	CCTCAGC	1 cut(s)	83
BccI	CCATC	7 cut(s)	158, 239, 281, 392, 452, 470, 1010
BceAI	ACGGC	3 cut(s)	359, 631, 901
BclI	TGATCA	2 cut(s)	33, 846
BcoDI	GTCTC	3 cut(s)	340, 397, 672
BfaI	CTAG	2 cut(s)	540, 875
BfoI	RGCGCY	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	950
BisI	GCNGC	2 cut(s)	186, 468
BlsI	GCNGC	2 cut(s)	187, 469
BmgBI	CACGTC	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	141, 358
BmiI	GGNNCC	4 cut(s)	16, 280, 645, 966
BmsI	GCATC	1 cut(s)	588
BpiI	GAAGAC	3 cut(s)	205, 520, 779
Bpu10I	CCTNAGC	2 cut(s)	20, 83
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	3 cut(s)	245, 495, 658
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	4 cut(s)	249, 279, 390, 456
BsaJI	CCNNGG	4 cut(s)	426, 647, 777, 945
BsaXI	ACNNNNNCTCC	8 cut(s)	245, 275, 278, 308, 425, 455, 510, 540
Bse1I	ACTGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	4 cut(s)	426, 647, 777, 945
BseGI	GGATG	3 cut(s)	114, 569, 982
BseJI	GATNNNNATC	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	11, 97
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	4 cut(s)	38, 191, 250, 995
Bsh1236I	CGCG	2 cut(s)	210, 740
BshFI	GGCC	5 cut(s)	142, 317, 359, 888, 944
BshNI	GGYRCC	3 cut(s)	278, 643, 964
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	3 cut(s)	340, 397, 672
BsmBI	CGTCTC	2 cut(s)	340, 397
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	5 cut(s)	142, 317, 359, 888, 944
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	7 cut(s)	186, 208, 468, 484, 521, 800, 974
BspANI	GGCC	5 cut(s)	142, 317, 359, 888, 944
BspCNI	CTCAG	2 cut(s)	12, 96
BspFNI	CGCG	2 cut(s)	210, 740
BspLI	GGNNCC	4 cut(s)	16, 280, 645, 966
BspPI	GGATC	6 cut(s)	37, 83, 160, 499, 547, 659
BspT104I	TTCGAA	1 cut(s)	531
BspT107I	GGYRCC	3 cut(s)	278, 643, 964
BsrBI	CCGCTC	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	426, 647, 777, 945
BssNI	GRCGYC	4 cut(s)	249, 279, 390, 456
BssSI	CACGAG	1 cut(s)	764
BssT1I	CCWWGG	2 cut(s)	426, 945
Bst2BI	CACGAG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	94, 859
Bst6I	CTCTTC	1 cut(s)	1020
BstACI	GRCGYC	4 cut(s)	249, 279, 390, 456
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	3 cut(s)	245, 495, 658
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	484, 933
BstDEI	CTNAG	2 cut(s)	20, 83
BstDSI	CCRYGG	2 cut(s)	426, 647
BstF5I	GGATG	3 cut(s)	114, 569, 982
BstFNI	CGCG	2 cut(s)	210, 740
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	185, 281, 955
BstMAI	GTCTC	3 cut(s)	340, 397, 672
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
BstNSI	RCATGY	2 cut(s)	175, 439
BstUI	CGCG	2 cut(s)	210, 740
BstV2I	GAAGAC	3 cut(s)	205, 520, 779
BstX2I	RGATCY	3 cut(s)	42, 75, 651
BstYI	RGATCY	3 cut(s)	42, 75, 651
BsuRI	GGCC	5 cut(s)	142, 317, 359, 888, 944
BtgI	CCRYGG	2 cut(s)	426, 647
BtgZI	GCGATG	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	684
BtsCI	GGATG	3 cut(s)	114, 569, 982
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	2 cut(s)	484, 933
CfoI	GCGC	3 cut(s)	185, 281, 955
Cfr13I	GGNCC	2 cut(s)	141, 358
CseI	GACGC	3 cut(s)	199, 379, 445
Csp6I	GTAC	4 cut(s)	112, 133, 607, 664
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	6 cut(s)	163, 172, 238, 364, 427, 436
CviQI	GTAC	4 cut(s)	112, 133, 607, 664
DdeI	CTNAG	2 cut(s)	20, 83
DinI	GGCGCC	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	426, 945
Eco72I	CACGTG	2 cut(s)	245, 495
EcoO109I	RGGNCCY	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	426, 945
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	426, 945
Esp3I	CGTCTC	2 cut(s)	340, 397
FaeI	CATG	6 cut(s)	166, 175, 241, 367, 430, 439
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	6 cut(s)	162, 171, 237, 363, 426, 435
FauI	CCCGC	2 cut(s)	491, 793
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	2 cut(s)	33, 846
FblI	GTMKAC	3 cut(s)	102, 252, 378
Fnu4HI	GCNGC	2 cut(s)	186, 468
FokI	GGATG	3 cut(s)	101, 556, 989
Fsp4HI	GCNGC	2 cut(s)	186, 468
FspBI	CTAG	2 cut(s)	540, 875
GlaI	GCGC	3 cut(s)	184, 280, 954
GluI	GCNGC	2 cut(s)	186, 468
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	5 cut(s)	142, 317, 359, 888, 944
HgaI	GACGC	3 cut(s)	199, 379, 445
HhaI	GCGC	3 cut(s)	185, 281, 955
Hin1I	GRCGYC	4 cut(s)	249, 279, 390, 456
Hin1II	CATG	6 cut(s)	166, 175, 241, 367, 430, 439
Hin6I	GCGC	3 cut(s)	183, 279, 953
HinP1I	GCGC	3 cut(s)	183, 279, 953
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	589
HphI	GGTGA	4 cut(s)	82, 151, 226, 820
Hpy166II	GTNNAC	4 cut(s)	103, 253, 379, 433
Hpy188I	TCNGA	1 cut(s)	518
Hpy188III	TCNNGA	4 cut(s)	37, 550, 698, 823
Hpy8I	GTNNAC	4 cut(s)	103, 253, 379, 433
Hpy99I	CGWCG	6 cut(s)	68, 227, 269, 374, 461, 688
HpyCH4III	ACNGT	2 cut(s)	94, 859
HpyCH4IV	ACGT	7 cut(s)	63, 244, 249, 494, 584, 657, 683
HpyCH4V	TGCA	1 cut(s)	931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
HpyF3I	CTNAG	2 cut(s)	20, 83
HpySE526I	ACGT	7 cut(s)	63, 244, 249, 494, 584, 657, 683
Hsp92I	GRCGYC	4 cut(s)	249, 279, 390, 456
Hsp92II	CATG	6 cut(s)	166, 175, 241, 367, 430, 439
HspAI	GCGC	3 cut(s)	183, 279, 953
KasI	GGCGCC	1 cut(s)	278
Ksp22I	TGATCA	2 cut(s)	33, 846
LmnI	GCTCC	3 cut(s)	20, 518, 622
LpnPI	CCDG	4 cut(s)	32, 124, 286, 917
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	2 cut(s)	540, 875
MaeII	ACGT	7 cut(s)	63, 244, 249, 494, 584, 657, 683
MaeIII	GTNAC	4 cut(s)	240, 245, 859, 881
MbiI	CCGCTC	1 cut(s)	521
MboII	GAAGA	7 cut(s)	52, 70, 139, 205, 520, 784, 970
MflI	RGATCY	3 cut(s)	42, 75, 651
MluCI	AATT	2 cut(s)	721, 926
Mly113I	GGCGCC	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	333, 535
MroXI	GAANNNNTTC	1 cut(s)	721
MseI	TTAA	1 cut(s)	743
MslI	CAYNNNNRTG	2 cut(s)	236, 347
Mva1269I	GAATGC	1 cut(s)	976
MvnI	CGCG	2 cut(s)	210, 740
MwoI	GCNNNNNNNGC	6 cut(s)	12, 21, 191, 467, 941, 950
NarI	GGCGCC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	426
NdeI	CATATG	1 cut(s)	71
NlaIII	CATG	6 cut(s)	166, 175, 241, 367, 430, 439
NlaIV	GGNNCC	4 cut(s)	16, 280, 645, 966
NmeAIII	GCCGAG	2 cut(s)	293, 758
NmuCI	GTSAC	3 cut(s)	240, 245, 859
NspI	RCATGY	2 cut(s)	175, 439
NspV	TTCGAA	1 cut(s)	531
PciI	ACATGT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PctI	GAATGC	1 cut(s)	976
PdmI	GAANNNNTTC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	187, 469
PluTI	GGCGCC	1 cut(s)	282
PmaCI	CACGTG	2 cut(s)	245, 495
PmlI	CACGTG	2 cut(s)	245, 495
Ppu21I	YACGTR	3 cut(s)	245, 495, 658
PscI	ACATGT	1 cut(s)	171
PspCI	CACGTG	2 cut(s)	245, 495
PspN4I	GGNNCC	4 cut(s)	16, 280, 645, 966
PspPI	GGNCC	2 cut(s)	141, 358
PsuI	RGATCY	3 cut(s)	42, 75, 651
RsaI	GTAC	4 cut(s)	113, 134, 608, 665
RsaNI	GTAC	4 cut(s)	112, 133, 607, 664
RseI	CAYNNNNRTG	2 cut(s)	236, 347
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	2 cut(s)	186, 468
Sau96I	GGNCC	2 cut(s)	141, 358
SfaNI	GCATC	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	531
SmiMI	CAYNNNNRTG	2 cut(s)	236, 347
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	721, 926
SsiI	CCGC	7 cut(s)	186, 208, 468, 484, 521, 800, 974
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	540, 875
StyI	CCWWGG	2 cut(s)	426, 945
TaaI	ACNGT	2 cut(s)	94, 859
TaiI	ACGT	7 cut(s)	66, 247, 252, 497, 587, 660, 686
TaqI	TCGA	7 cut(s)	120, 225, 489, 531, 686, 699, 923
TasI	AATT	2 cut(s)	721, 926
TatI	WGTACW	3 cut(s)	111, 132, 606
TauI	GCSGC	2 cut(s)	188, 470
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	3 cut(s)	240, 245, 859
Tsp45I	GTSAC	3 cut(s)	240, 245, 859
TspDTI	ATGAA	3 cut(s)	331, 683, 806
TspGWI	ACGGA	4 cut(s)	253, 322, 489, 609
TspRI	CASTG	1 cut(s)	862
XceI	RCATGY	2 cut(s)	175, 439
XmiI	GTMKAC	3 cut(s)	102, 252, 378
XmnI	GAANNNNTTC	1 cut(s)	721
XspI	CTAG	2 cut(s)	540, 875
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.