Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041063.1

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

116 .. 896

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggcgccgagcacgatccggaaggcgatcggagcctttaaggaccagacgagcatcagaatttcgaaggtcgccagcaacatggggccggacctggaggtcgccatcgtgaaggccaatagtcacgaggacgagccggccggcgagaagtacatccgggagatcctccaactgacgtcatactcccggggatacgtccacgcatgcgtgtcggcggtgtcgaagttactggggaagacgcgcgactggatcgtggcacttaagacgttgatgttggtgcacctcctcgtgaacgacggcgaccctgtcttccaggacgagtccctggatcaccttgaatcccattacctctttatactatgtggctccttgttgcttggcttttctgttggtgccttggatctatgtggagtacccaacactgagggacacctcgagtttccatttcgattacgtgattttcgggatcaattccttctgtgcgttcgctttgaatcttgctatgttcttgcttgtggggaagacctcggctttgacgatgaatgtggcgggtgtggtgaaagattggatcttgattgccttctcttggtctgtgatcaaggacactgtgacctcaatcaatctggtgggttatggactaacactcgaaattgcagtgttcaaatatctaacaagctatcgcagatgatttttgaacttgtagcaatcaaggctttactgccattaagagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

244

Amino Acids

26.98

Weight (kDa)

5.12

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	4, 392
AccII	CGCG	2 cut(s)	241, 243
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	2 cut(s)	215, 549
AclWI	GGATC	7 cut(s)	10, 157, 257, 336, 408, 474, 576
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	5, 176
AfaI	GTAC	2 cut(s)	152, 414
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	338, 494, 662, 695
AjnI	CCWGG	3 cut(s)	93, 312, 324
AluBI	AGCT	1 cut(s)	676
AluI	AGCT	1 cut(s)	676
Alw21I	GWGCWC	2 cut(s)	14, 282
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	7 cut(s)	10, 157, 257, 336, 408, 474, 576
Ama87I	CYCGRG	2 cut(s)	186, 434
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	3 cut(s)	86, 114, 138
ApaLI	GTGCAC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	2 cut(s)	7, 243
AspS9I	GGNCC	3 cut(s)	43, 86, 91
AsuC2I	CCSGG	3 cut(s)	158, 187, 188
AsuHPI	GGTGA	2 cut(s)	323, 569
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	186, 434
AvaII	GGWCC	2 cut(s)	43, 91
BaeGI	GKGCMC	1 cut(s)	282
BanI	GGYRCC	2 cut(s)	4, 392
BauI	CACGAG	2 cut(s)	125, 287
BbsI	GAAGAC	3 cut(s)	242, 301, 528
Bbv12I	GWGCWC	2 cut(s)	14, 282
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	3 cut(s)	95, 314, 326
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	3 cut(s)	158, 187, 188
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	185
Bme1390I	CCNGG	6 cut(s)	95, 158, 187, 188, 314, 326
Bme18I	GGWCC	2 cut(s)	43, 91
BmeT110I	CYCGRG	2 cut(s)	186, 434
BmgT120I	GGNCC	3 cut(s)	43, 86, 91
BmiI	GGNNCC	5 cut(s)	6, 34, 87, 367, 394
BmrFI	CCNGG	6 cut(s)	95, 158, 187, 188, 314, 326
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	3 cut(s)	242, 301, 528
BpmI	CTGGAG	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	3 cut(s)	158, 187, 188
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	5, 176
BsaJI	CCNNGG	5 cut(s)	186, 187, 324, 396, 526
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	2 cut(s)	136, 140
Bse1I	ACTGG	2 cut(s)	234, 251
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	95, 314, 326
BseDI	CCNNGG	5 cut(s)	186, 187, 324, 396, 526
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	234, 251
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	241, 243
Bsh1285I	CGRYCG	2 cut(s)	30, 141
BshFI	GGCC	3 cut(s)	88, 116, 140
BshNI	GGYRCC	2 cut(s)	4, 392
BsiEI	CGRYCG	2 cut(s)	30, 141
BsiHKAI	GWGCWC	2 cut(s)	14, 282
BsiHKCI	CYCGRG	2 cut(s)	186, 434
BsiSI	CCGG	6 cut(s)	19, 89, 137, 141, 157, 187
BslFI	GGGAC	2 cut(s)	307, 441
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmFI	GGGAC	2 cut(s)	307, 441
BsnI	GGCC	3 cut(s)	88, 116, 140
BsoBI	CYCGRG	2 cut(s)	186, 434
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	14, 282
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
BspACI	CCGC	2 cut(s)	215, 549
BspANI	GGCC	3 cut(s)	88, 116, 140
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	241, 243
BspLI	GGNNCC	5 cut(s)	6, 34, 87, 367, 394
BspPI	GGATC	7 cut(s)	10, 157, 257, 336, 408, 474, 576
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	4, 392
BspTI	CTTAAG	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	136, 140
BsrI	ACTGG	2 cut(s)	234, 251
BssAI	RCCGGY	2 cut(s)	136, 140
BssECI	CCNNGG	5 cut(s)	186, 187, 324, 396, 526
BssMI	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
BssNI	GRCGYC	2 cut(s)	5, 176
BssSI	CACGAG	2 cut(s)	125, 287
BssT1I	CCWWGG	1 cut(s)	396
Bst2BI	CACGAG	2 cut(s)	125, 287
Bst2UI	CCWGG	3 cut(s)	95, 314, 326
Bst4CI	ACNGT	1 cut(s)	608
BstACI	GRCGYC	2 cut(s)	5, 176
BstAFI	CTTAAG	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	76, 138, 142, 205
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	2 cut(s)	241, 243
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 243
BstKTI	GATC	9 cut(s)	18, 30, 165, 252, 331, 403, 469, 571, 598
BstMBI	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
BstMCI	CGRYCG	2 cut(s)	30, 141
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 710
BstNI	CCWGG	3 cut(s)	95, 314, 326
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	6 cut(s)	93, 156, 185, 186, 312, 324
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	2 cut(s)	241, 243
BstV2I	GAAGAC	3 cut(s)	242, 301, 528
BstX2I	RGATCY	3 cut(s)	162, 400, 568
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	3 cut(s)	162, 400, 568
BstZI	CGGCCG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	88, 116, 140
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	420, 604, 661
Cac8I	GCNNGC	4 cut(s)	76, 138, 142, 205
CfoI	GCGC	2 cut(s)	7, 243
Cfr10I	RCCGGY	2 cut(s)	136, 140
Cfr13I	GGNCC	3 cut(s)	43, 86, 91
Cfr9I	CCCGGG	1 cut(s)	186
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	151, 413
CviAII	CATG	2 cut(s)	82, 204
CviQI	GTAC	2 cut(s)	151, 413
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	9 cut(s)	17, 29, 164, 251, 330, 402, 468, 570, 597
DpnII	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	43, 91
Eco52I	CGGCCG	1 cut(s)	138
Eco88I	CYCGRG	2 cut(s)	186, 434
EcoRII	CCWGG	3 cut(s)	93, 312, 324
EcoT14I	CCWWGG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	85, 207
FaiI	YATR	9 cut(s)	83, 181, 205, 356, 361, 406, 504, 634, 733
FaqI	GGGAC	2 cut(s)	307, 441
FatI	CATG	2 cut(s)	81, 203
FauI	CCCGC	1 cut(s)	542
FbaI	TGATCA	1 cut(s)	595
FokI	GGATG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	6, 242
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	88, 116, 140
HapII	CCGG	6 cut(s)	19, 89, 137, 141, 157, 187
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	7, 243
Hin1I	GRCGYC	2 cut(s)	5, 176
Hin1II	CATG	2 cut(s)	85, 207
Hin6I	GCGC	2 cut(s)	5, 241
HinP1I	GCGC	2 cut(s)	5, 241
HinfI	GANTC	3 cut(s)	320, 338, 494
HpaII	CCGG	6 cut(s)	19, 89, 137, 141, 157, 187
HphI	GGTGA	2 cut(s)	323, 569
Hpy166II	GTNNAC	3 cut(s)	199, 280, 292
Hpy188I	TCNGA	2 cut(s)	32, 59
Hpy188III	TCNNGA	6 cut(s)	19, 109, 125, 289, 464, 572
Hpy8I	GTNNAC	3 cut(s)	199, 280, 292
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	5 cut(s)	16, 61, 106, 485, 590
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	4 cut(s)	176, 195, 266, 454
HpyCH4V	TGCA	2 cut(s)	280, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 710
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	4 cut(s)	176, 195, 266, 454
Hsp92I	GRCGYC	2 cut(s)	5, 176
Hsp92II	CATG	2 cut(s)	85, 207
HspAI	GCGC	2 cut(s)	5, 241
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	2 cut(s)	136, 140
KroNI	GCCGGC	2 cut(s)	138, 142
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
LmnI	GCTCC	2 cut(s)	32, 371
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	4 cut(s)	176, 195, 266, 454
MaeIII	GTNAC	3 cut(s)	122, 225, 608
MalI	GATC	9 cut(s)	17, 29, 164, 251, 330, 402, 468, 570, 597
MboI	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
MboII	GAAGA	3 cut(s)	247, 301, 533
MflI	RGATCY	3 cut(s)	162, 400, 568
MhlI	GDGCHC	2 cut(s)	14, 282
MluCI	AATT	3 cut(s)	60, 470, 649
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	2 cut(s)	136, 140
MseI	TTAA	3 cut(s)	39, 261, 725
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	6 cut(s)	19, 89, 137, 141, 157, 187
MspR9I	CCNGG	6 cut(s)	95, 158, 187, 188, 314, 326
MvaI	CCWGG	3 cut(s)	95, 314, 326
MvnI	CGCG	2 cut(s)	241, 243
MwoI	GCNNNNNNNGC	2 cut(s)	32, 710
NaeI	GCCGGC	2 cut(s)	138, 142
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	3 cut(s)	158, 187, 188
NdeII	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
NgoMIV	GCCGGC	2 cut(s)	136, 140
NlaIII	CATG	2 cut(s)	85, 207
NlaIV	GGNNCC	5 cut(s)	6, 34, 87, 367, 394
NmeAIII	GCCGAG	2 cut(s)	33, 507
NmuCI	GTSAC	2 cut(s)	122, 608
NspI	RCATGY	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	207
PaeR7I	CTCGAG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	2 cut(s)	218, 534
PdiI	GCCGGC	2 cut(s)	138, 142
PfeI	GAWTC	2 cut(s)	338, 494
PflFI	GACNNNGTC	1 cut(s)	305
PfoI	TCCNGGA	2 cut(s)	156, 312
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	93, 312, 324
PspGI	CCWGG	3 cut(s)	93, 312, 324
PspN4I	GGNNCC	5 cut(s)	6, 34, 87, 367, 394
PspPI	GGNCC	3 cut(s)	43, 86, 91
PspXI	VCTCGAGB	1 cut(s)	434
PsuI	RGATCY	3 cut(s)	162, 400, 568
PsyI	GACNNNGTC	1 cut(s)	305
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	152, 414
RsaNI	GTAC	2 cut(s)	151, 413
SaqAI	TTAA	3 cut(s)	39, 261, 725
Sau3AI	GATC	9 cut(s)	15, 27, 162, 249, 328, 400, 466, 568, 595
Sau96I	GGNCC	3 cut(s)	43, 86, 91
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	6 cut(s)	95, 158, 187, 188, 314, 326
SduI	GDGCHC	2 cut(s)	14, 282
SfaNI	GCATC	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	43, 91
SlaI	CTCGAG	1 cut(s)	434
SmaI	CCCGGG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	260, 434
SmoI	CTYRAG	2 cut(s)	260, 434
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	3 cut(s)	60, 470, 649
SsiI	CCGC	2 cut(s)	215, 549
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	6 cut(s)	93, 156, 185, 186, 312, 324
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	4 cut(s)	179, 198, 269, 457
TaqI	TCGA	5 cut(s)	65, 221, 435, 448, 646
TasI	AATT	3 cut(s)	60, 470, 649
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	338, 494
Tru1I	TTAA	3 cut(s)	39, 261, 725
Tru9I	TTAA	3 cut(s)	39, 261, 725
TscAI	CASTG	3 cut(s)	427, 611, 661
TseFI	GTSAC	2 cut(s)	122, 608
Tsp45I	GTSAC	2 cut(s)	122, 608
TspDTI	ATGAA	1 cut(s)	555
TspMI	CCCGGG	1 cut(s)	186
TspRI	CASTG	3 cut(s)	427, 611, 661
Tth111I	GACNNNGTC	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	43, 91
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.