Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007631.1

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Forward (+)

44187 .. 44774

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007631.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgatagttgcaacttatggggaggtgaaatttaactcgtggggagtgagcctgcagctactggcggtgggtttcgaggcgacgaggttggttctgattcagatcttgcttaatgctaagggtattagcttgaatctgattacttctctttattatgttgccccgtgttgctttgcgttcctgtgcattccatggattgttgtggagttccccgtgttgaaggagacttcgagattctactttgatttcttcatttttaggacgaattcgctctttgcgtttgcgttgaacatggttgtgtttctgctggtggggaagactttggctttgacaatgaatattgccggggttgtgaaaaattgcctcttgattacattttcgtggtcggtgatcaaagataccgtgacgaaaatcaatctgtttgggtatctgattgcgtttatcggtgtgacttattacaatcatgcaaaattgcaggcgcttatggccgtcgaggcgcagaagaaggctcagcaggacaatgcggaggctgggaagttgttggaggagagagatgaggatggaaagaagaacgaaactcaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

7.6

Isoelectric Point (pI)

19.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 524
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	29, 265
AgsI	TTSAA	3 cut(s)	133, 220, 289
AluBI	AGCT	2 cut(s)	58, 129
AluI	AGCT	2 cut(s)	58, 129
Alw26I	GTCTC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	29, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspLEI	GCGC	2 cut(s)	481, 499
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	37, 400
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	494
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	56
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	191, 345
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	191, 345
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	102, 390
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	2 cut(s)	65, 524
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	523
BspMAI	CTGCAG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	191, 345
BssMI	GATC	2 cut(s)	102, 390
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	53, 477
BstDEI	CTNAG	3 cut(s)	117, 510, 579
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	481, 499
BstKTI	GATC	2 cut(s)	105, 393
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	102, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 494
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	53, 477
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	2 cut(s)	481, 499
CviAII	CATG	3 cut(s)	192, 292, 464
CviJI	RGCY	7 cut(s)	51, 58, 129, 326, 488, 509, 530
CviKI_1	RGCY	7 cut(s)	51, 58, 129, 326, 488, 509, 530
DdeI	CTNAG	3 cut(s)	117, 510, 579
DpnI	GATC	2 cut(s)	104, 392
DpnII	GATC	2 cut(s)	102, 390
EaeI	YGGCCR	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	195, 295, 467
FaiI	YATR	6 cut(s)	18, 156, 193, 293, 465, 485
FatI	CATG	3 cut(s)	191, 291, 463
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	2 cut(s)	480, 498
GluI	GCNGC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	481, 499
Hin1II	CATG	3 cut(s)	195, 295, 467
Hin6I	GCGC	2 cut(s)	479, 497
HinP1I	GCGC	2 cut(s)	479, 497
HinfI	GANTC	3 cut(s)	97, 133, 234
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	37, 400
Hpy188I	TCNGA	4 cut(s)	96, 102, 138, 432
Hpy188III	TCNNGA	3 cut(s)	231, 367, 581
Hpy99I	CGWCG	2 cut(s)	85, 494
HpyAV	CCTTC	2 cut(s)	214, 499
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	11, 55, 186, 467, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 494
HpyF3I	CTNAG	3 cut(s)	117, 510, 579
Hsp92II	CATG	3 cut(s)	195, 295, 467
HspAI	GCGC	2 cut(s)	479, 497
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	102, 390
LpnPI	CCDG	9 cut(s)	47, 65, 194, 293, 358, 461, 500, 516, 566
Lsp1109I	GCAGC	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	403, 448
MalI	GATC	2 cut(s)	104, 392
MboI	GATC	2 cut(s)	102, 390
MboII	GAAGA	4 cut(s)	241, 328, 514, 580
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	4 cut(s)	29, 265, 358, 470
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	8 cut(s)	16, 70, 78, 374, 487, 520, 538, 550
MseI	TTAA	2 cut(s)	33, 111
MslI	CAYNNNNRTG	2 cut(s)	296, 379
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	485, 494
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	102, 390
NlaIII	CATG	3 cut(s)	195, 295, 467
NmuCI	GTSAC	2 cut(s)	403, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	97, 133, 234
PkrI	GCNGC	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	296, 379
SaqAI	TTAA	2 cut(s)	33, 111
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	102, 390
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	4 cut(s)	27, 60, 89, 131
SfcI	CTRYAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	296, 379
Sse9I	AATT	4 cut(s)	29, 265, 358, 470
SsiI	CCGC	2 cut(s)	65, 524
SspI	AATATT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	75, 230, 492
TasI	AATT	4 cut(s)	29, 265, 358, 470
TfiI	GAWTC	3 cut(s)	97, 133, 234
Tru1I	TTAA	2 cut(s)	33, 111
Tru9I	TTAA	2 cut(s)	33, 111
TseFI	GTSAC	2 cut(s)	403, 448
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	2 cut(s)	403, 448
TspDTI	ATGAA	2 cut(s)	241, 350
XapI	RAATTY	2 cut(s)	29, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.