Rmu_sc0015049.1_g000003

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015049.1
OG0001025
Physical Location & Seq
Reverse (-)
12618 .. 13205
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015049.1_g000003.1.cds

Sequence Viewer

Length: 588 bp
atgacagttgcaacttatggggaggtgaaatttaactcgtggggagtgagcctgcagctactggcggtgggtttcgaggcgacgaggttggttctgattcagatcttgcttaatgctaagggtattagcttgaatctgattacttctctttattatgttgccccgtgttgctttgcgttcctgtgcattccatggattgttgtggagttccccgtgttgaaggagacttcgagtttctactttgatttcttcatttttaggacgaattcgctctttgcgtttgcgttgaacatggttgtgtttctgctagcggggaagactttggctttgacaatgaatattgccggggttgtgaaaaattgcctcttgattacattttcgtggtcggtgatcaaagatacagtgacgaaaatcaatctgattgggtatctgattgcgtttatcggtgtgacttattacaatcatgcaaaattgcaggcgcttatggccgtcgaggcgcagaagaaggctcagcaggacaatgcggaggctgggaagttgttggaggagagagatgaggatggaaagaagaacgaaactcaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

195

Amino Acids

21.79

Weight (kDa)

6.58

Isoelectric Point (pI)

20.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 65, 311, 524
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 2 cut(s) 29, 265
AgsI TTSAA 3 cut(s) 133, 220, 289
AluBI AGCT 2 cut(s) 58, 129
AluI AGCT 2 cut(s) 58, 129
Alw26I GTCTC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 2 cut(s) 29, 265
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AspLEI GCGC 2 cut(s) 481, 499
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 37, 400
AsuNHI GCTAGC 1 cut(s) 307
BauI CACGAG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 473
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 482
BglI GCCNNNNNGGC 1 cut(s) 494
BglII AGATCT 1 cut(s) 102
BisI GCNGC 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 191, 345
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 191, 345
BseGI GGATG 1 cut(s) 565
BseJI GATNNNNATC 1 cut(s) 101
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 1 cut(s) 488
BsiSI CCGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 488
Bsp143I GATC 2 cut(s) 102, 390
Bsp1720I GCTNAGC 1 cut(s) 510
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 3 cut(s) 65, 311, 524
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 1 cut(s) 523
BspMAI CTGCAG 1 cut(s) 57
BspOI GCTAGC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 191, 345
BssMI GATC 2 cut(s) 102, 390
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 7, 403
BstC8I GCNNGC 3 cut(s) 53, 309, 477
BstDEI CTNAG 3 cut(s) 117, 510, 579
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 565
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 2 cut(s) 481, 499
BstKTI GATC 2 cut(s) 105, 393
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 102, 390
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 53, 309, 477
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 2 cut(s) 481, 499
CviAII CATG 3 cut(s) 192, 292, 464
CviJI RGCY 7 cut(s) 51, 58, 129, 326, 488, 509, 530
CviKI_1 RGCY 7 cut(s) 51, 58, 129, 326, 488, 509, 530
DdeI CTNAG 3 cut(s) 117, 510, 579
DpnI GATC 2 cut(s) 104, 392
DpnII GATC 2 cut(s) 102, 390
EaeI YGGCCR 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 3 cut(s) 195, 295, 467
FaiI YATR 6 cut(s) 18, 156, 193, 293, 465, 485
FatI CATG 3 cut(s) 191, 291, 463
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 308
GlaI GCGC 2 cut(s) 480, 498
GluI GCNGC 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 1 cut(s) 488
HapII CCGG 1 cut(s) 345
HhaI GCGC 2 cut(s) 481, 499
Hin1II CATG 3 cut(s) 195, 295, 467
Hin6I GCGC 2 cut(s) 479, 497
HinP1I GCGC 2 cut(s) 479, 497
HinfI GANTC 2 cut(s) 97, 133
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 37, 400
Hpy188I TCNGA 5 cut(s) 96, 102, 138, 420, 432
Hpy188III TCNNGA 2 cut(s) 367, 581
Hpy99I CGWCG 2 cut(s) 85, 494
HpyAV CCTTC 2 cut(s) 214, 499
HpyCH4III ACNGT 2 cut(s) 7, 403
HpyCH4V TGCA 5 cut(s) 11, 55, 186, 467, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 3 cut(s) 117, 510, 579
Hsp92II CATG 3 cut(s) 195, 295, 467
HspAI GCGC 2 cut(s) 479, 497
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 2 cut(s) 102, 390
LpnPI CCDG 8 cut(s) 47, 65, 194, 358, 461, 500, 516, 566
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 403, 448
MalI GATC 2 cut(s) 104, 392
MboI GATC 2 cut(s) 102, 390
MboII GAAGA 4 cut(s) 241, 328, 514, 580
MflI RGATCY 1 cut(s) 102
MluCI AATT 4 cut(s) 29, 265, 358, 470
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 8 cut(s) 16, 70, 78, 374, 487, 520, 538, 550
MseI TTAA 2 cut(s) 33, 111
MslI CAYNNNNRTG 2 cut(s) 296, 379
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NciI CCSGG 1 cut(s) 346
NcoI CCATGG 1 cut(s) 191
NdeII GATC 2 cut(s) 102, 390
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 3 cut(s) 195, 295, 467
NmuCI GTSAC 2 cut(s) 403, 448
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 97, 133
PkrI GCNGC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 530
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 296, 379
SaqAI TTAA 2 cut(s) 33, 111
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 102, 390
ScrFI CCNGG 1 cut(s) 346
SetI ASST 4 cut(s) 27, 60, 89, 131
SfcI CTRYAG 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 296, 379
Sse9I AATT 4 cut(s) 29, 265, 358, 470
SsiI CCGC 3 cut(s) 65, 311, 524
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 7, 403
TaqI TCGA 3 cut(s) 75, 230, 492
TasI AATT 4 cut(s) 29, 265, 358, 470
TfiI GAWTC 2 cut(s) 97, 133
Tru1I TTAA 2 cut(s) 33, 111
Tru9I TTAA 2 cut(s) 33, 111
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 2 cut(s) 403, 448
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 2 cut(s) 403, 448
TspDTI ATGAA 2 cut(s) 241, 350
TspRI CASTG 1 cut(s) 408
XapI RAATTY 2 cut(s) 29, 265
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.