Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001025

Physical Location & Seq

Genomic Coordinates Reverse (-)

10904948 .. 10905997

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGCAAGGGTGGCTCCCTGAGCGAGAGCGTGATAAAAAAGATCCTCCTCTCCTACACCTATGTTGCCATCTGGATCTTCCTCTCCTTCAGCGTCATCGTCTACAACAAATACATCCTCGACAGGAAGATGTACAACTGGCCCTTCCCCATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCTCCCTCGCCTTTCTCCTCGTCCGAGTCTTCCGCCTCGTCGAGCCCGTCACCATGTCCCGCGACCTCTACCTCTCCTCCGTTGTCCCCATCGGCGCCCTCTACTCCCTCTCCCTCTGGCTTTCCAACTCCGCCTACATTTACCTCTCCGTCTCCTTCATCCAGATGCTCAAGGCCCTCATGCCCGTCGCTGTCTACTCCATCGGCGTCTCCTTCAAAAAAGAGTCCTTCAAGACCGACACCATGGTGAACATGATCTCCATCTCCATCGGCGTCGCCATCGCCGCCTACGGCGAGGCCCGATTCGACACCTGGGGCGTCTTCCTCCAGCTCGGCGCCGTCGCATTCGAGGCCACCCGCCTTGTCTTGATCCAGATCCTCCTCACATCCAAAGGCATTACCCTTAACCCCATCACATCTCTCTACTATGTCGCGCCTTGCTGCTTGGCTTTCCTCTTCGTCCCCTGGATCTTCGTCGAGTACCCGGTTCTGCGTGATTCGTCGAGCTTCCATTTCGATTTCTTGATTTTTGGGACCAATTCTATCTGCGCATTTGCTCTGAATCTCGCCGTGTTCTTGCTCGTCGGAAAGACCTCGGCGCTGACGATGAATGTGGCCGGAGTGGTTAAAGACTGGCTCCTGATCGCCTTTTCGTGGTCCGTGATCAAGGACACCGTGACCCCGATCAATCTGTTCGGCTACGGCCTGGCGTTTTTGGGCGTTGCCTACTACAACCACTCCAAATTGCAGGCTCTGAAGGCCAAGGAGGCGCAGAAGAAGACGGCGCAGCACGACGAGGAGGCCAGCAGGCTCATGGAGGAGAGGGAAGGGGAAGGAATTGGGAAGAGGAACGAATCCCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

39.04

Weight (kDa)

8.97

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	20 - 306	6.5e-22	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25520 AT4G32390 AT5G11230 AT5G25400
fragaria_vesca	FvH4_1g03360 FvH4_2g29300
malus_domestica	MD02G1033200.v1.1 MD08G1148300.v1.1 MD15G1123800.v1.1 MD15G1173600.v1.1
prunus_persica	Prupe.1G479300_v2.0.a1 Prupe.7G242100_v2.0.a1
pyrus_communis	pycom02g02730 pycom08g12490 pycom15g11150
rosa_chinensis	RchiOBHm_Chr2g0085641 RchiOBHm_Chr2g0085661 RchiOBHm_Chr2g0088591 RchiOBHm_Chr5g0059661 RchiOBHm_Chr6g0298121
rosa_laevigata	RLG00000011533 RLG00000015968 RLG00000028074
rosa_multiflora	Rmu_co8046638.1_g000001 Rmu_co8159962.1_g000001 Rmu_sc0000693.1_g000069 Rmu_sc0001679.1_g000015 Rmu_sc0002800.1_g000002 Rmu_sc0004733.1_g000001 Rmu_sc0006261.1_g000003 Rmu_sc0007631.1_g000009 Rmu_sc0008215.1_g000001 Rmu_sc0015049.1_g000003 Rmu_sc0041063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152510 Rroxscaffold_5G00337750 Rroxscaffold_5G00337760 Rroxscaffold_7G00169910
rosa_rugosa	Rorug01G0034500 Rorug01G0485400 Rorug06G0279000
rosa_samantha	Rh1CG242500 Rh2AG011100 Rh2AG040600 Rh2BG039400 Rh2CG012400 Rh2CG040200 Rh2DG039700 Rh4AG402300 Rh4CG429400 Rh4DG409400 Rh5BG401000 Rh5CG425100 Rh6AG389100 Rh6BG397400 Rh6CG403300 Rh6DG389900
rosa_wichuraiana	Rw0G010660 Rw2G003380 Rw6G033980 Rw7G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	733
AccB1I	GGYRCC	2 cut(s)	278, 518
AccI	GTMKAC	2 cut(s)	102, 378
AccII	CGCG	2 cut(s)	246, 617
AciI	CCGC	5 cut(s)	217, 244, 315, 468, 541
AclWI	GGATC	6 cut(s)	37, 83, 160, 547, 553, 659
AcoI	YGGCCR	1 cut(s)	798
AcuI	CTGAAG	2 cut(s)	73, 959
AcyI	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
AfaI	GTAC	2 cut(s)	134, 665
AfiI	CCNNNNNNNGG	1 cut(s)	837
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	400, 415
AjnI	CCWGG	3 cut(s)	494, 647, 888
AleI	CACNNNNGTG	1 cut(s)	428
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	514, 690
AluI	AGCT	2 cut(s)	514, 690
Alw26I	GTCTC	2 cut(s)	340, 397
AlwI	GGATC	6 cut(s)	37, 83, 160, 547, 553, 659
AlwNI	CAGNNNCTG	1 cut(s)	937
AoxI	GGCC	8 cut(s)	140, 357, 480, 534, 798, 886, 942, 984
ApeKI	GCWGC	2 cut(s)	624, 970
AspLEI	GCGC	8 cut(s)	185, 281, 521, 619, 734, 784, 955, 970
AspS9I	GGNCC	5 cut(s)	141, 358, 481, 717, 840
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	151, 226, 442
AvaII	GGWCC	2 cut(s)	717, 840
BanI	GGYRCC	2 cut(s)	278, 518
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	205, 496, 968
BbvI	GCAGC	2 cut(s)	611, 982
BccI	CCATC	8 cut(s)	77, 158, 281, 392, 452, 458, 470, 602
BceAI	ACGGC	5 cut(s)	490, 506, 737, 901, 981
BciT130I	CCWGG	3 cut(s)	496, 649, 890
BclI	TGATCA	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	340, 397
BfoI	RGCGCY	3 cut(s)	282, 522, 785
BglI	GCCNNNNNGGC	1 cut(s)	950
BisI	GCNGC	3 cut(s)	468, 625, 971
BlsI	GCNGC	3 cut(s)	469, 626, 972
Bme1390I	CCNGG	4 cut(s)	496, 649, 668, 890
Bme18I	GGWCC	2 cut(s)	717, 840
BmgT120I	GGNCC	5 cut(s)	141, 358, 481, 717, 840
BmiI	GGNNCC	5 cut(s)	16, 280, 520, 718, 821
BmrFI	CCNGG	4 cut(s)	496, 649, 668, 890
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	3 cut(s)	205, 496, 968
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	668
BsaBI	GATNNNNATC	2 cut(s)	443, 557
BsaHI	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
BsaJI	CCNNGG	5 cut(s)	426, 495, 647, 777, 945
BsaXI	ACNNNNNCTCC	8 cut(s)	245, 275, 278, 308, 425, 455, 905, 935
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse1I	ACTGG	2 cut(s)	143, 821
Bse8I	GATNNNNATC	2 cut(s)	443, 557
BseBI	CCWGG	3 cut(s)	496, 649, 890
BseDI	CCNNGG	5 cut(s)	426, 495, 647, 777, 945
BseGI	GGATG	3 cut(s)	114, 342, 569
BseJI	GATNNNNATC	2 cut(s)	443, 557
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	143, 821
BseRI	GAGGAG	6 cut(s)	38, 191, 250, 554, 995, 1016
BseXI	GCAGC	2 cut(s)	611, 982
Bsh1236I	CGCG	2 cut(s)	246, 617
BshFI	GGCC	8 cut(s)	142, 359, 482, 536, 800, 888, 944, 986
BshNI	GGYRCC	2 cut(s)	278, 518
BsiSI	CCGG	2 cut(s)	668, 801
BslFI	GGGAC	4 cut(s)	226, 254, 629, 730
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	2 cut(s)	340, 397
BsmBI	CGTCTC	2 cut(s)	340, 397
BsmFI	GGGAC	4 cut(s)	226, 254, 629, 730
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	8 cut(s)	142, 359, 482, 536, 800, 888, 944, 986
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	5 cut(s)	217, 244, 315, 468, 541
BspANI	GGCC	8 cut(s)	142, 359, 482, 536, 800, 888, 944, 986
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	246, 617
BspLI	GGNNCC	5 cut(s)	16, 280, 520, 718, 821
BspPI	GGATC	6 cut(s)	37, 83, 160, 547, 553, 659
BspT107I	GGYRCC	2 cut(s)	278, 518
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	143, 821
BssECI	CCNNGG	5 cut(s)	426, 495, 647, 777, 945
BssNI	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
BssT1I	CCWWGG	2 cut(s)	426, 945
Bst2UI	CCWGG	3 cut(s)	496, 649, 890
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	2 cut(s)	644, 1022
BstACI	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	933, 988, 992
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	114, 342, 569
BstFNI	CGCG	2 cut(s)	246, 617
BstH2I	RGCGCY	3 cut(s)	282, 522, 785
BstHHI	GCGC	8 cut(s)	185, 281, 521, 619, 734, 784, 955, 970
BstMAI	GTCTC	2 cut(s)	340, 397
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 21, 191, 467, 533, 941, 950
BstNI	CCWGG	3 cut(s)	496, 649, 890
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	4 cut(s)	494, 647, 666, 888
BstUI	CGCG	2 cut(s)	246, 617
BstV1I	GCAGC	2 cut(s)	611, 982
BstV2I	GAAGAC	3 cut(s)	205, 496, 968
BstX2I	RGATCY	4 cut(s)	42, 75, 558, 651
BstYI	RGATCY	4 cut(s)	42, 75, 558, 651
BsuRI	GGCC	8 cut(s)	142, 359, 482, 536, 800, 888, 944, 986
BtgI	CCRYGG	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	114, 342, 569
Cac8I	GCNNGC	3 cut(s)	933, 988, 992
CaiI	CAGNNNCTG	1 cut(s)	937
CfoI	GCGC	8 cut(s)	185, 281, 521, 619, 734, 784, 955, 970
Cfr13I	GGNCC	5 cut(s)	141, 358, 481, 717, 840
CseI	GACGC	4 cut(s)	82, 379, 445, 490
Csp6I	GTAC	2 cut(s)	133, 664
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	7 cut(s)	163, 172, 238, 364, 427, 436, 997
CviQI	GTAC	2 cut(s)	133, 664
DdeI	CTNAG	1 cut(s)	20
DinI	GGCGCC	2 cut(s)	280, 520
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	2 cut(s)	644, 1022
EarI	CTCTTC	2 cut(s)	644, 1022
EciI	GGCGGA	2 cut(s)	206, 304
Eco130I	CCWWGG	2 cut(s)	426, 945
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	717, 840
Eco57I	CTGAAG	2 cut(s)	73, 959
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	494, 647, 888
EcoT14I	CCWWGG	2 cut(s)	426, 945
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	2 cut(s)	280, 520
EheI	GGCGCC	2 cut(s)	280, 520
ErhI	CCWWGG	2 cut(s)	426, 945
Esp3I	CGTCTC	2 cut(s)	340, 397
FaeI	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 1000
FaqI	GGGAC	4 cut(s)	226, 254, 629, 730
FatI	CATG	7 cut(s)	162, 171, 237, 363, 426, 435, 996
FauI	CCCGC	2 cut(s)	251, 548
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	2 cut(s)	102, 378
Fnu4HI	GCNGC	3 cut(s)	468, 625, 971
FokI	GGATG	3 cut(s)	101, 329, 556
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	468, 625, 971
FspI	TGCGCA	1 cut(s)	733
GlaI	GCGC	8 cut(s)	184, 280, 520, 618, 733, 783, 954, 969
GluI	GCNGC	3 cut(s)	468, 625, 971
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	3 cut(s)	282, 522, 785
HaeIII	GGCC	8 cut(s)	142, 359, 482, 536, 800, 888, 944, 986
HapII	CCGG	2 cut(s)	668, 801
HgaI	GACGC	4 cut(s)	82, 379, 445, 490
HhaI	GCGC	8 cut(s)	185, 281, 521, 619, 734, 784, 955, 970
Hin1I	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
Hin1II	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 1000
Hin6I	GCGC	8 cut(s)	183, 279, 519, 617, 732, 782, 953, 968
HinP1I	GCGC	8 cut(s)	183, 279, 519, 617, 732, 782, 953, 968
HinfI	GANTC	6 cut(s)	210, 407, 486, 680, 745, 1037
HpaII	CCGG	2 cut(s)	668, 801
HphI	GGTGA	3 cut(s)	151, 226, 442
Hpy166II	GTNNAC	3 cut(s)	103, 379, 433
Hpy188I	TCNGA	4 cut(s)	209, 744, 770, 939
Hpy188III	TCNNGA	7 cut(s)	73, 346, 415, 550, 556, 706, 823
Hpy8I	GTNNAC	3 cut(s)	103, 379, 433
Hpy99I	CGWCG	8 cut(s)	227, 374, 461, 527, 662, 688, 770, 980
HpyAV	CCTTC	9 cut(s)	97, 154, 187, 349, 406, 421, 934, 1004, 1010
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4V	TGCA	1 cut(s)	931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 21, 191, 467, 533, 941, 950
HpyF3I	CTNAG	1 cut(s)	20
Hsp92I	GRCGYC	5 cut(s)	279, 390, 456, 501, 519
Hsp92II	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 1000
HspAI	GCGC	8 cut(s)	183, 279, 519, 617, 732, 782, 953, 968
KasI	GGCGCC	2 cut(s)	278, 518
Ksp22I	TGATCA	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	20, 825
Lsp1109I	GCAGC	2 cut(s)	611, 982
LweI	GCATC	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	232, 859
MboII	GAAGA	9 cut(s)	70, 139, 205, 496, 631, 646, 970, 973, 1039
MflI	RGATCY	4 cut(s)	42, 75, 558, 651
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	721, 926, 1020, 1045
Mly113I	GGCGCC	2 cut(s)	279, 519
MlyI	GAGTC	2 cut(s)	219, 416
MmeI	TCCRAC	2 cut(s)	333, 748
MseI	TTAA	2 cut(s)	588, 810
MslI	CAYNNNNRTG	2 cut(s)	347, 428
MspI	CCGG	2 cut(s)	668, 801
MspR9I	CCNGG	4 cut(s)	496, 649, 668, 890
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	3 cut(s)	496, 649, 890
MvnI	CGCG	2 cut(s)	246, 617
MwoI	GCNNNNNNNGC	7 cut(s)	12, 21, 191, 467, 533, 941, 950
NarI	GGCGCC	2 cut(s)	279, 519
NciI	CCSGG	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	426
NlaIII	CATG	7 cut(s)	166, 175, 241, 367, 430, 439, 1000
NlaIV	GGNNCC	5 cut(s)	16, 280, 520, 718, 821
NmeAIII	GCCGAG	2 cut(s)	495, 758
NmuCI	GTSAC	2 cut(s)	232, 859
NsbI	TGCGCA	1 cut(s)	733
NspI	RCATGY	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	428
PciI	ACATGT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 785
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	4 cut(s)	486, 680, 745, 1037
PkrI	GCNGC	3 cut(s)	469, 626, 972
PleI	GAGTC	2 cut(s)	218, 415
PluTI	GGCGCC	2 cut(s)	282, 522
PpsI	GAGTC	2 cut(s)	218, 415
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	494, 647, 888
PspGI	CCWGG	3 cut(s)	494, 647, 888
PspN4I	GGNNCC	5 cut(s)	16, 280, 520, 718, 821
PspPI	GGNCC	5 cut(s)	141, 358, 481, 717, 840
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	4 cut(s)	42, 75, 558, 651
RsaI	GTAC	2 cut(s)	134, 665
RsaNI	GTAC	2 cut(s)	133, 664
RseI	CAYNNNNRTG	2 cut(s)	347, 428
SaqAI	TTAA	2 cut(s)	588, 810
SatI	GCNGC	3 cut(s)	468, 625, 971
Sau96I	GGNCC	5 cut(s)	141, 358, 481, 717, 840
SchI	GAGTC	2 cut(s)	219, 416
ScrFI	CCNGG	4 cut(s)	496, 649, 668, 890
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	62, 252, 258, 330, 497, 516, 692, 779
SfaNI	GCATC	1 cut(s)	339
SfoI	GGCGCC	2 cut(s)	280, 520
SinI	GGWCC	2 cut(s)	717, 840
SmiMI	CAYNNNNRTG	2 cut(s)	347, 428
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	721, 926, 1020, 1045
SsiI	CCGC	5 cut(s)	217, 244, 315, 468, 541
SspDI	GGCGCC	2 cut(s)	278, 518
StyD4I	CCNGG	4 cut(s)	494, 647, 666, 888
StyI	CCWWGG	2 cut(s)	426, 945
TaaI	ACNGT	1 cut(s)	859
TaqI	TCGA	7 cut(s)	120, 225, 489, 531, 660, 686, 699
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	4 cut(s)	721, 926, 1020, 1045
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	486, 680, 745, 1037
Tru1I	TTAA	2 cut(s)	588, 810
Tru9I	TTAA	2 cut(s)	588, 810
TseFI	GTSAC	2 cut(s)	232, 859
TseI	GCWGC	2 cut(s)	624, 970
Tsp45I	GTSAC	2 cut(s)	232, 859
TspDTI	ATGAA	2 cut(s)	331, 806
TspGWI	ACGGA	3 cut(s)	253, 322, 832
VpaK11BI	GGWCC	2 cut(s)	717, 840
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XmiI	GTMKAC	2 cut(s)	102, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.