AT2G28840

E3 ubiquitin-protein ligase XBAT31

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12378272 .. 12380809
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28840.2

Sequence Viewer

Length: 1371 bp
ATGGGGCAGAGTATGAGCTGTGGAAGTCGACCGGAGCACGGAATATTCGCCTCTGTACAGTGCGGCGATATCATCACTATCCGTCGTGTGATGGCGACGGAGCCTAGTCTGTTGAATCAAACTACTCCTTATGATCGTCACTCTGTTCTTCATGTCGCTGCTGCTAATGGTCAGATCGAGATTTTGTCATTGCTTTTGGAACGATTTACGAATCCAGATTTGTTGAATCGTCACAAGCAGACTCCGTTAATGTTGGCTGCGATGTATGGAAGAATCTCTTGTGTGAAGAAGCTAGCTGAAGTTGGAGCTAATATTTTGATGTTTGATTCTGTGAATCGAAGAACATGTTTGCATTACGCTGCTTATTATGGACATGCTAATTGTGTTCAAGCTATTCTCTCTGCTGCTCAATCAAGTCCTGTTGCTGTCCATTGGGGATATGCGAGATTTGTGAACATAAGAGATGATAAAGGAGCGACTCCGTTGCATTTAGCTGCTCGACAGAGACGACCTGAATGTGTGAATGTTTTGTTGGATAGTGGTTCTCTTGTTTGTGCATCTACTAGTGTATATGGTTCTCCAGGAAGCACACCTCTTCATTTAGCAGCTAGAAGTGGATCTATAGATTGTGTCAGAAAGTTGCTTGCTTGGGGTGCTGATCGTCTTCAACGAGACGCTTCTGGGAGAATACCTTATGTGGTTGCGATGAAGCATAAGCATGGAGCATGTGGAGCCTTACTTAATCCGTCCTCTGCAGAGCCACTTGTTTGGCCATCACCATTAAAGTTCATCAGTGAGCTTAATGACGAGGCGAAACTTCTCTTAGAGCAGGCTTTAATGGAGGCTAACAGGGAGAGAGAGAAAACCATCCTCAAAGGAACAGCTTATTCCTTACCATCACCCTCTTTCTCTGACACGGATGATAACATGTCCGAGGTGAGTGATACGGAACTGTGCTGCATTTGCTTTGAGCAAGTATGTACAATTGAAGTTAAAGACTGTGGTCACCAAATGTGTGCACAATGCACACTTGCACTGTGCTGTCACAACAAACCAAACCCAACGACCTCAACCGTGACTCCACCGGTCTGTCCGTTCTGTAGAAGCACCATTGCATGTTTAGTCGTCGCCCAGAACAACAACAACAACAACGAAAAGAGCAAAAGCCTAGATGATGTTGTTGTTGTTGATCGTGAGGCAGGTGATGTTAGCTCCTCCAAATTCAGAAAACATAGAAGATCAATAAACCTTGGCGAAGAAAGCAGCAGCTTCATGGGACTATCAACTATTGGATCATTCGGTAGGATAACCGGCCGTGGCTCGGGAAGGATCGCAGCCGAAAACGAGCTGATGGACAAACCAATATTGTGA

Protein Analysis

456

Amino Acids

49.61

Weight (kDa)

8.01

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 46 - 121 5.5e-13 Ankyrin repeats (3 copies)
Ank_4 PF13637 72 - 117 8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 99 - 168 3.4e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 138 - 206 1.9e-12 Ankyrin repeats (3 copies)
Ank PF00023 181 - 211 4.3e-07 Ankyrin repeat
RING_XB3-XBAT31 PF24921 304 - 358 1.5e-21 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1190
Acc36I ACCTGC 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 625, 1300, 1337
AcoI YGGCCR 2 cut(s) 770, 1312
AcsI RAATTY 1 cut(s) 1220
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 57, 982
AfiI CCNNNNNNNGG 2 cut(s) 38, 1321
AflIII ACRYGT 2 cut(s) 344, 927
AgeI ACCGGT 1 cut(s) 1084
AgsI TTSAA 5 cut(s) 115, 226, 389, 668, 989
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
Alw21I GWGCWC 2 cut(s) 39, 1021
Alw26I GTCTC 2 cut(s) 499, 666
Alw44I GTGCAC 1 cut(s) 1017
AlwI GGATC 3 cut(s) 625, 1300, 1337
Ama87I CYCGRG 1 cut(s) 1321
AoxI GGCC 2 cut(s) 770, 1312
ApaLI GTGCAC 1 cut(s) 1017
ApoI RAATTY 1 cut(s) 1220
AsiGI ACCGGT 1 cut(s) 1084
AsuHPI GGTGA 5 cut(s) 768, 891, 949, 998, 1214
AsuNHI GCTAGC 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 1321
BaeGI GKGCMC 1 cut(s) 1021
BalI TGGCCA 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 39, 1021
BccI CCATC 5 cut(s) 85, 781, 875, 904, 1345
BceAI ACGGC 1 cut(s) 1299
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 499, 666
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 5 cut(s) 105, 293, 564, 609, 1169
BfmI CTRYAG 3 cut(s) 621, 753, 1099
BfuAI ACCTGC 1 cut(s) 1190
Bme1390I CCNGG 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 1321
BmiI GGNNCC 2 cut(s) 102, 733
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 566
BmtI GCTAGC 1 cut(s) 296
BoxI GACNNNNGTC 1 cut(s) 1002
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 933, 1249, 1315
BsaWI WCCGGW 2 cut(s) 31, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 1063, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 1321
Bse118I RCCGGY 2 cut(s) 1084, 1310
Bse3DI GCAATG 2 cut(s) 188, 1110
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 933, 1249, 1315
BseGI GGATG 2 cut(s) 867, 925
BseLI CCNNNNNNNGG 2 cut(s) 38, 1321
BseMI GCAATG 2 cut(s) 188, 1110
BseRI GAGGAG 1 cut(s) 1204
BseSI GKGCMC 1 cut(s) 1021
BseX3I CGGCCG 1 cut(s) 1312
Bsh1285I CGRYCG 2 cut(s) 32, 1315
BshFI GGCC 2 cut(s) 772, 1314
BshTI ACCGGT 1 cut(s) 1084
BsiEI CGRYCG 2 cut(s) 32, 1315
BsiHKAI GWGCWC 2 cut(s) 39, 1021
BsiHKCI CYCGRG 1 cut(s) 1321
BsiSI CCGG 3 cut(s) 32, 1085, 1311
BslFI GGGAC 1 cut(s) 1290
BslI CCNNNNNNNGG 2 cut(s) 38, 1321
BsmAI GTCTC 2 cut(s) 499, 666
BsmBI CGTCTC 2 cut(s) 499, 666
BsmFI GGGAC 1 cut(s) 1290
BsnI GGCC 2 cut(s) 772, 1314
BsoBI CYCGRG 1 cut(s) 1321
Bsp1286I GDGCHC 2 cut(s) 39, 1021
Bsp1407I TGTACA 2 cut(s) 55, 980
Bsp143I GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
BspACI CCGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 772, 1314
BspLI GGNNCC 2 cut(s) 102, 733
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 1190
BspOI GCTAGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 625, 1300, 1337
BsrDI GCAATG 2 cut(s) 188, 1110
BsrFI RCCGGY 2 cut(s) 1084, 1310
BsrGI TGTACA 2 cut(s) 55, 980
BssAI RCCGGY 2 cut(s) 1084, 1310
BssECI CCNNGG 3 cut(s) 933, 1249, 1315
BssMI GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
BssT1I CCWWGG 1 cut(s) 1249
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 5 cut(s) 60, 954, 1001, 1038, 1075
Bst6I CTCTTC 1 cut(s) 600
BstAUI TGTACA 2 cut(s) 55, 980
BstC8I GCNNGC 3 cut(s) 294, 645, 831
BstDEI CTNAG 1 cut(s) 823
BstDSI CCRYGG 1 cut(s) 1315
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 2 cut(s) 867, 925
BstKTI GATC 8 cut(s) 136, 177, 620, 661, 1192, 1241, 1295, 1332
BstMAI GTCTC 2 cut(s) 499, 666
BstMBI GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
BstMCI CGRYCG 2 cut(s) 32, 1315
BstMWI GCNNNNNNNGC 4 cut(s) 653, 731, 963, 1260
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 5 cut(s) 348, 377, 729, 931, 1119
BstPAI GACNNNNGTC 1 cut(s) 1002
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 3 cut(s) 621, 753, 1099
BstSLI GKGCMC 1 cut(s) 1021
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 617
BstZI CGGCCG 1 cut(s) 1312
BsuRI GGCC 2 cut(s) 772, 1314
BtgI CCRYGG 1 cut(s) 1315
BtgZI GCGATG 2 cut(s) 275, 719
BtsCI GGATG 2 cut(s) 867, 925
BtsIMutI CAGTG 3 cut(s) 65, 799, 1034
BveI ACCTGC 1 cut(s) 1190
Cac8I GCNNGC 3 cut(s) 294, 645, 831
Cfr10I RCCGGY 2 cut(s) 1084, 1310
CseI GACGC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 56, 981
CspAI ACCGGT 1 cut(s) 1084
CviAII CATG 8 cut(s) 152, 345, 374, 719, 726, 928, 1116, 1273
CviQI GTAC 2 cut(s) 56, 981
DdeI CTNAG 1 cut(s) 823
DpnI GATC 8 cut(s) 135, 176, 619, 660, 1191, 1240, 1294, 1331
DpnII GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
EaeI YGGCCR 2 cut(s) 770, 1312
EagI CGGCCG 1 cut(s) 1312
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EclXI CGGCCG 1 cut(s) 1312
Eco130I CCWWGG 1 cut(s) 1249
Eco32I GATATC 1 cut(s) 70
Eco52I CGGCCG 1 cut(s) 1312
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 1321
Eco91I GGTNACC 1 cut(s) 1004
EcoO65I GGTNACC 1 cut(s) 1004
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 1249
ErhI CCWWGG 1 cut(s) 1249
Esp3I CGTCTC 2 cut(s) 499, 666
FaeI CATG 8 cut(s) 155, 348, 377, 722, 729, 931, 1119, 1276
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FaqI GGGAC 1 cut(s) 1290
FatI CATG 8 cut(s) 151, 344, 373, 718, 725, 927, 1115, 1272
FblI GTMKAC 1 cut(s) 28
FokI GGATG 2 cut(s) 854, 932
FspBI CTAG 5 cut(s) 105, 293, 564, 609, 1169
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 2 cut(s) 772, 1314
HapII CCGG 3 cut(s) 32, 1085, 1311
HgaI GACGC 1 cut(s) 683
Hin1II CATG 8 cut(s) 155, 348, 377, 722, 729, 931, 1119, 1276
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 9 cut(s) 115, 211, 226, 241, 273, 326, 334, 478, 1078
HpaII CCGG 3 cut(s) 32, 1085, 1311
HphI GGTGA 5 cut(s) 768, 891, 949, 998, 1214
Hpy166II GTNNAC 3 cut(s) 29, 454, 1019
Hpy188I TCNGA 5 cut(s) 174, 635, 913, 934, 1226
Hpy188III TCNNGA 4 cut(s) 178, 215, 1193, 1323
Hpy8I GTNNAC 3 cut(s) 29, 454, 1019
Hpy99I CGWCG 3 cut(s) 87, 100, 1130
HpyAV CCTTC 1 cut(s) 1320
HpyCH4III ACNGT 5 cut(s) 60, 954, 1001, 1038, 1075
HpyCH4V TGCA 9 cut(s) 352, 487, 557, 755, 960, 1019, 1026, 1034, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 653, 731, 963, 1260
HpyF3I CTNAG 1 cut(s) 823
Hsp92II CATG 8 cut(s) 155, 348, 377, 722, 729, 931, 1119, 1276
Kzo9I GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
LmnI GCTCC 7 cut(s) 34, 100, 305, 473, 722, 731, 1217
LweI GCATC 1 cut(s) 566
MaeI CTAG 5 cut(s) 105, 293, 564, 609, 1169
MaeIII GTNAC 5 cut(s) 137, 230, 1004, 1043, 1075
MalI GATC 8 cut(s) 135, 176, 619, 660, 1191, 1240, 1294, 1331
MboI GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
MboII GAAGA 8 cut(s) 140, 282, 298, 351, 587, 656, 1248, 1268
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 39, 1021
MlsI TGGCCA 1 cut(s) 772
MluCI AATT 3 cut(s) 379, 984, 1220
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 3 cut(s) 235, 472, 1072
MmeI TCCRAC 2 cut(s) 283, 513
Mox20I TGGCCA 1 cut(s) 772
MscI TGGCCA 1 cut(s) 772
MseI TTAA 6 cut(s) 248, 741, 782, 801, 836, 993
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 772
MspI CCGG 3 cut(s) 32, 1085, 1311
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 1 cut(s) 984
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 653, 731, 963, 1260
NdeII GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 8 cut(s) 155, 348, 377, 722, 729, 931, 1119, 1276
NlaIV GGNNCC 2 cut(s) 102, 733
NmuCI GTSAC 5 cut(s) 137, 230, 1004, 1043, 1075
NspI RCATGY 5 cut(s) 348, 377, 729, 931, 1119
PaqCI CACCTGC 1 cut(s) 1190
PciI ACATGT 2 cut(s) 344, 927
PcsI WCGNNNNNNNCGW 2 cut(s) 505, 667
PfeI GAWTC 6 cut(s) 115, 211, 226, 273, 326, 334
PfoI TCCNGGA 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 1084
PleI GAGTC 3 cut(s) 235, 472, 1072
PpsI GAGTC 3 cut(s) 235, 472, 1072
PscI ACATGT 2 cut(s) 344, 927
PshAI GACNNNNGTC 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 102, 733
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 2 cut(s) 57, 982
RsaNI GTAC 2 cut(s) 56, 981
RseI CAYNNNNRTG 1 cut(s) 717
SalI GTCGAC 1 cut(s) 27
SaqAI TTAA 6 cut(s) 248, 741, 782, 801, 836, 993
Sau3AI GATC 8 cut(s) 133, 174, 617, 658, 1189, 1238, 1292, 1329
SchI GAGTC 3 cut(s) 235, 472, 1072
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 2 cut(s) 39, 1021
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 3 cut(s) 621, 753, 1099
SmiMI CAYNNNNRTG 1 cut(s) 717
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 3 cut(s) 379, 984, 1220
SsiI CCGC 1 cut(s) 63
SspI AATATT 3 cut(s) 45, 313, 1365
SspMI CTAG 5 cut(s) 105, 293, 564, 609, 1169
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 1249
TaaI ACNGT 5 cut(s) 60, 954, 1001, 1038, 1075
TaqI TCGA 4 cut(s) 28, 177, 337, 499
TasI AATT 3 cut(s) 379, 984, 1220
TatI WGTACW 2 cut(s) 55, 980
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 6 cut(s) 115, 211, 226, 273, 326, 334
Tru1I TTAA 6 cut(s) 248, 741, 782, 801, 836, 993
Tru9I TTAA 6 cut(s) 248, 741, 782, 801, 836, 993
TscAI CASTG 3 cut(s) 65, 799, 1041
TseFI GTSAC 5 cut(s) 137, 230, 1004, 1043, 1075
Tsp45I GTSAC 5 cut(s) 137, 230, 1004, 1043, 1075
TspDTI ATGAA 5 cut(s) 140, 587, 722, 778, 1261
TspGWI ACGGA 9 cut(s) 54, 71, 113, 234, 471, 735, 932, 962, 1083
TspRI CASTG 3 cut(s) 65, 799, 1041
VneI GTGCAC 1 cut(s) 1017
XapI RAATTY 1 cut(s) 1220
XceI RCATGY 5 cut(s) 348, 377, 729, 931, 1119
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 5 cut(s) 105, 293, 564, 609, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.