Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

313890 .. 317837

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000147.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgttgaccaagaaacctgtggtcatggaatcctatgatgagattgtgttccctgagccttcaaagaggtttttagctcgtgtccagaatcaccctgctatagcctcccccagattacctgctggtttgactctgccttctcctgtgccagttgaagatccaagtaaaagaaagagaggtgacacaaaagatcatcccctgacccagtggttcatgaatgtttcagaagctgatgagcttctacaactggctgcggctcatcagcagatgagcatttctctctctgaaatttatggatatatagtaaggagcttagacctgattgatgttataaattttgttgcatttttgagaatggcatatatagttgctttgaaacacaaacatggagcttatgcagctatgctaaatccgtcatcagctgagcctctggtgtggccatcacctttgaagtttattagtgagcttaatgaggaggcaaaagctttgttagaacaggccttaatggaggcaaacaaggagagggagaagaatatcttgaaaggaagcggttactctcttgcatctccatctcattctgatgtgcattctgatatagggatggatgagaatctttctgatgtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctatatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatacgaggatatcaattccaacttcatgtatgcaatctgcaatgaagtcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

288

Amino Acids

32.4

Weight (kDa)

6.01

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	3 cut(s)	254, 549, 763
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	3 cut(s)	288, 334, 719
AgsI	TTSAA	5 cut(s)	63, 155, 376, 451, 541
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	437, 498
ApeKI	GCWGC	3 cut(s)	251, 398, 799
ApoI	RAATTY	3 cut(s)	288, 334, 719
AsuHPI	GGTGA	3 cut(s)	83, 191, 435
BalI	TGGCCA	1 cut(s)	439
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	238, 410, 811
BccI	CCATC	3 cut(s)	448, 577, 595
BcgI	CGANNNNNNTGC	1 cut(s)	841
BciVI	GTATCC	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	696
BisI	GCNGC	5 cut(s)	252, 255, 399, 763, 800
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	5 cut(s)	253, 256, 400, 764, 801
BmiI	GGNNCC	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	572, 780
BmuI	ACTGGG	1 cut(s)	199
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	609
Bse1I	ACTGG	5 cut(s)	149, 205, 252, 656, 796
Bse3DI	GCAATG	1 cut(s)	859
Bse8I	GATNNNNATC	1 cut(s)	609
BseGI	GGATG	3 cut(s)	193, 606, 610
BseJI	GATNNNNATC	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	859
BseMII	CTCAG	2 cut(s)	45, 414
BseNI	ACTGG	5 cut(s)	149, 205, 252, 656, 796
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	238, 410, 811
BshFI	GGCC	2 cut(s)	439, 500
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	439, 500
Bsp143I	GATC	3 cut(s)	157, 190, 724
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	3 cut(s)	254, 549, 763
BspANI	GGCC	2 cut(s)	439, 500
BspCNI	CTCAG	2 cut(s)	46, 415
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	859
BsrI	ACTGG	5 cut(s)	149, 205, 252, 656, 796
BssMI	GATC	3 cut(s)	157, 190, 724
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	54, 313, 423
BstF5I	GGATG	3 cut(s)	193, 606, 610
BstKTI	GATC	3 cut(s)	160, 193, 727
BstMBI	GATC	3 cut(s)	157, 190, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 768
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	238, 410, 811
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	2 cut(s)	439, 500
BtsCI	GGATG	3 cut(s)	193, 606, 610
BtsIMutI	CAGTG	2 cut(s)	212, 789
BveI	ACCTGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	213
CviAII	CATG	5 cut(s)	25, 214, 386, 749, 838
DdeI	CTNAG	3 cut(s)	54, 313, 423
DpnI	GATC	3 cut(s)	159, 192, 726
DpnII	GATC	3 cut(s)	157, 190, 724
EaeI	YGGCCR	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	823
FaeI	CATG	5 cut(s)	28, 217, 389, 752, 841
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	5 cut(s)	24, 213, 385, 748, 837
Fnu4HI	GCNGC	5 cut(s)	252, 255, 399, 763, 800
FokI	GGATG	3 cut(s)	180, 613, 617
Fsp4HI	GCNGC	5 cut(s)	252, 255, 399, 763, 800
GluI	GCNGC	5 cut(s)	252, 255, 399, 763, 800
HaeIII	GGCC	2 cut(s)	439, 500
Hin1II	CATG	5 cut(s)	28, 217, 389, 752, 841
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	4 cut(s)	29, 88, 130, 610
HphI	GGTGA	3 cut(s)	83, 191, 435
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	6 cut(s)	226, 286, 580, 592, 619, 729
Hpy188III	TCNNGA	4 cut(s)	85, 214, 538, 775
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	69, 147, 746
HpyCH4V	TGCA	8 cut(s)	344, 398, 563, 586, 635, 771, 845, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 768
HpyF3I	CTNAG	3 cut(s)	54, 313, 423
Hsp92II	CATG	5 cut(s)	28, 217, 389, 752, 841
Kzo9I	GATC	3 cut(s)	157, 190, 724
LmnI	GCTCC	3 cut(s)	309, 389, 662
Lsp1109I	GCAGC	3 cut(s)	238, 410, 811
LweI	GCATC	2 cut(s)	572, 780
MaeIII	GTNAC	2 cut(s)	179, 551
MalI	GATC	3 cut(s)	159, 192, 726
MboI	GATC	3 cut(s)	157, 190, 724
MboII	GAAGA	3 cut(s)	167, 541, 677
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	4 cut(s)	288, 334, 719, 826
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	2 cut(s)	640, 855
Mox20I	TGGCCA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	4 cut(s)	468, 503, 693, 717
MslI	CAYNNNNRTG	2 cut(s)	384, 579
Msp20I	TGGCCA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	586
MwoI	GCNNNNNNNGC	2 cut(s)	398, 768
NdeII	GATC	3 cut(s)	157, 190, 724
NlaIII	CATG	5 cut(s)	28, 217, 389, 752, 841
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	500
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	29, 88, 610
PkrI	GCNGC	5 cut(s)	253, 256, 400, 764, 801
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	654
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	422
RseI	CAYNNNNRTG	2 cut(s)	384, 579
SaqAI	TTAA	4 cut(s)	468, 503, 693, 717
SatI	GCNGC	5 cut(s)	252, 255, 399, 763, 800
Sau3AI	GATC	3 cut(s)	157, 190, 724
SchI	GAGTC	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	572, 780
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	384, 579
Sse9I	AATT	4 cut(s)	288, 334, 719, 826
SseBI	AGGCCT	1 cut(s)	500
SsiI	CCGC	3 cut(s)	254, 549, 763
StuI	AGGCCT	1 cut(s)	500
TasI	AATT	4 cut(s)	288, 334, 719, 826
TauI	GCSGC	2 cut(s)	257, 765
TfiI	GAWTC	3 cut(s)	29, 88, 610
Tru1I	TTAA	4 cut(s)	468, 503, 693, 717
Tru9I	TTAA	4 cut(s)	468, 503, 693, 717
TscAI	CASTG	2 cut(s)	212, 796
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	251, 398, 799
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	202, 230, 677, 726, 826
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	212, 796
XapI	RAATTY	3 cut(s)	288, 334, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.