Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000924.1

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

66302 .. 69298

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000924.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgagaattggaggagggttgcttagtggagcacagtctagtatacttgaggagatgaagttgttaaaagaactgcaggatcattttggcagcgatactgatgtctaccagtacctagagcctctgtacaatgactatcggaagttgagaagtaaattggctgatggacatcgccctcaaagagatggatcggggagaatgccatatatagttgctttgaaacacaaacatggagcttgtgcagctatgctaaatccgtcatcagctgagcctctggtgtggccatcacctttgaagtttattagtgagcttaatgaggaggcaaaagctttgttagaacaggccttaacggaggcaaacaaggagagggagaagaatatcttgaaaggaagcggttactctcttgcatctccatcgcattctgatgtgcattctgatatagggatggatgacaatctttctgagtgcataatgggttgtgcttttctcttgagcagtgatggtgcagcttcattggtgctagtgagtggggaaaaggcacttgaacttgggttacatgctcttgttcttcattcctctggaaaaccaacccctttggtactatacaccgccaggcgggctacaacctcagcggcggatcacccccagatcacccccgacgcgccgccactcgccgcgccaaagcagcatcagaagctcctgaagctgggaactgaagcacttcagtcccacatcgaaaacaaggaagaggtcagcctcctcctcacctataaaaggttctttcctctcttctcattaaggacgcattcaatacttacctactgttactttgtcaacataaatacattgactaacttgggcatcggagagttgaagaccgctcagcgtggtctccctctgacgccctttgtattttacttgacaggtagcggaggctttgagaacaccacaagtatcgatccgcccattggatcggcgttaacaaaggttcagctaccgccgaacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

336

Amino Acids

36.65

Weight (kDa)

6.46

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	881
AccI	GTMKAC	2 cut(s)	43, 105
AccII	CGCG	2 cut(s)	662, 677
AclWI	GGATC	5 cut(s)	87, 196, 645, 953, 979
AcoI	YGGCCR	1 cut(s)	281
AcuI	CTGAAG	3 cut(s)	707, 722, 735
AcyI	GRCGYC	1 cut(s)	902
AfaI	GTAC	3 cut(s)	113, 128, 600
AfiI	CCNNNNNNNGG	4 cut(s)	615, 706, 774, 968
AgsI	TTSAA	6 cut(s)	220, 295, 385, 545, 810, 874
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	9 cut(s)	236, 245, 266, 310, 329, 509, 697, 706, 994
AluI	AGCT	9 cut(s)	236, 245, 266, 310, 329, 509, 697, 706, 994
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	896
AlwI	GGATC	5 cut(s)	87, 196, 645, 953, 979
AoxI	GGCC	2 cut(s)	281, 342
ApeKI	GCWGC	4 cut(s)	90, 242, 506, 685
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	664, 679
AsuHPI	GGTGA	4 cut(s)	279, 632, 643, 757
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BalI	TGGCCA	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	628
BbvI	GCAGC	4 cut(s)	102, 254, 518, 697
BccI	CCATC	6 cut(s)	158, 179, 292, 421, 439, 494
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	3 cut(s)	39, 116, 521
BfmI	CTRYAG	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	7 cut(s)	91, 243, 507, 633, 665, 675, 686
BlpI	GCTNAGC	2 cut(s)	267, 882
BlsI	GCNGC	7 cut(s)	92, 244, 508, 634, 666, 676, 687
Bme1390I	CCNGG	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	416, 697, 870
BpiI	GAAGAC	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	628
Bpu1102I	GCTNAGC	2 cut(s)	267, 882
BpuEI	CTTGAG	2 cut(s)	68, 511
Bsa29I	ATCGAT	1 cut(s)	957
BsaBI	GATNNNNATC	2 cut(s)	168, 453
BsaHI	GRCGYC	1 cut(s)	902
BsaI	GGTCTC	1 cut(s)	896
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	615, 706, 774, 968
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	2 cut(s)	168, 453
BseBI	CCWGG	1 cut(s)	613
BseCI	ATCGAT	1 cut(s)	957
BseGI	GGATG	2 cut(s)	450, 454
BseJI	GATNNNNATC	2 cut(s)	168, 453
BseLI	CCNNNNNNNGG	4 cut(s)	615, 706, 774, 968
BseMII	CTCAG	4 cut(s)	258, 453, 642, 896
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	5 cut(s)	27, 65, 332, 749, 752
BseXI	GCAGC	4 cut(s)	102, 254, 518, 697
BseYI	CCCAGC	1 cut(s)	706
BsgI	GTGCAG	2 cut(s)	261, 525
Bsh1236I	CGCG	2 cut(s)	662, 677
BshFI	GGCC	2 cut(s)	283, 344
BshVI	ATCGAT	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	4 cut(s)	615, 706, 774, 968
BsmAI	GTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	4 cut(s)	204, 418, 430, 805
BsnI	GGCC	2 cut(s)	283, 344
Bso31I	GGTCTC	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
Bsp1720I	GCTNAGC	2 cut(s)	267, 882
BspANI	GGCC	2 cut(s)	283, 344
BspCNI	CTCAG	4 cut(s)	259, 454, 641, 895
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	2 cut(s)	662, 677
BspMAI	CTGCAG	1 cut(s)	78
BspPI	GGATC	5 cut(s)	87, 196, 645, 953, 979
BspTNI	GGTCTC	1 cut(s)	896
BsrBI	CCGCTC	1 cut(s)	881
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
BssNAI	GTATAC	1 cut(s)	44
BssNI	GRCGYC	1 cut(s)	902
Bst1107I	GTATAC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	36, 824
Bst6I	CTCTTC	2 cut(s)	741, 794
BstACI	GRCGYC	1 cut(s)	902
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	5 cut(s)	23, 267, 462, 628, 882
BstENI	CCTNNNNNAGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	450, 454
BstFNI	CGCG	2 cut(s)	662, 677
BstHHI	GCGC	2 cut(s)	664, 679
BstKTI	GATC	6 cut(s)	82, 191, 640, 651, 961, 974
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 617, 685, 694, 703
BstNI	CCWGG	1 cut(s)	613
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	662, 677
BstV1I	GCAGC	4 cut(s)	102, 254, 518, 697
BstV2I	GAAGAC	1 cut(s)	881
BstZ17I	GTATAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	957
BsuRI	GGCC	2 cut(s)	283, 344
BsuTUI	ATCGAT	1 cut(s)	957
BtgZI	GCGATG	2 cut(s)	155, 399
BtsCI	GGATG	2 cut(s)	450, 454
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	618
CfoI	GCGC	2 cut(s)	664, 679
ClaI	ATCGAT	1 cut(s)	957
CseI	GACGC	3 cut(s)	668, 811, 910
Csp6I	GTAC	3 cut(s)	112, 127, 599
CviAII	CATG	2 cut(s)	230, 557
CviQI	GTAC	3 cut(s)	112, 127, 599
DdeI	CTNAG	5 cut(s)	23, 267, 462, 628, 882
DpnI	GATC	6 cut(s)	81, 190, 639, 650, 960, 973
DpnII	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	741, 794
EarI	CTCTTC	2 cut(s)	741, 794
EciI	GGCGGA	2 cut(s)	650, 951
Eco147I	AGGCCT	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	896
Eco57I	CTGAAG	3 cut(s)	707, 722, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	611
FaeI	CATG	2 cut(s)	233, 560
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	2 cut(s)	229, 556
FauI	CCCGC	1 cut(s)	609
FblI	GTMKAC	2 cut(s)	43, 105
Fnu4HI	GCNGC	7 cut(s)	91, 243, 507, 633, 665, 675, 686
FokI	GGATG	2 cut(s)	457, 461
Fsp4HI	GCNGC	7 cut(s)	91, 243, 507, 633, 665, 675, 686
FspBI	CTAG	3 cut(s)	39, 116, 521
GlaI	GCGC	2 cut(s)	663, 678
GluI	GCNGC	7 cut(s)	91, 243, 507, 633, 665, 675, 686
GsaI	CCCAGC	1 cut(s)	710
HaeIII	GGCC	2 cut(s)	283, 344
HgaI	GACGC	3 cut(s)	668, 811, 910
HhaI	GCGC	2 cut(s)	664, 679
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	2 cut(s)	233, 560
Hin6I	GCGC	2 cut(s)	662, 677
HinP1I	GCGC	2 cut(s)	662, 677
HincII	GTYRAC	2 cut(s)	835, 981
HindII	GTYRAC	2 cut(s)	835, 981
HindIII	AAGCTT	1 cut(s)	327
HpaI	GTTAAC	1 cut(s)	981
HphI	GGTGA	4 cut(s)	279, 632, 643, 757
Hpy166II	GTNNAC	4 cut(s)	44, 106, 835, 981
Hpy188I	TCNGA	7 cut(s)	141, 424, 436, 463, 693, 866, 900
Hpy188III	TCNNGA	4 cut(s)	382, 490, 579, 700
Hpy8I	GTNNAC	4 cut(s)	44, 106, 835, 981
Hpy99I	CGWCG	1 cut(s)	662
HpyCH4III	ACNGT	2 cut(s)	36, 824
HpyCH4V	TGCA	6 cut(s)	76, 242, 407, 430, 468, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 617, 685, 694, 703
HpyF3I	CTNAG	5 cut(s)	23, 267, 462, 628, 882
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	2 cut(s)	233, 560
HspAI	GCGC	2 cut(s)	662, 677
KspAI	GTTAAC	1 cut(s)	981
Kzo9I	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
LmnI	GCTCC	3 cut(s)	29, 233, 702
Lsp1109I	GCAGC	4 cut(s)	102, 254, 518, 697
LweI	GCATC	3 cut(s)	416, 697, 870
MaeI	CTAG	3 cut(s)	39, 116, 521
MaeIII	GTNAC	3 cut(s)	395, 552, 824
MalI	GATC	6 cut(s)	81, 190, 639, 650, 960, 973
MbiI	CCGCTC	1 cut(s)	881
MboI	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
MboII	GAAGA	5 cut(s)	385, 560, 758, 781, 886
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	2 cut(s)	6, 155
MluNI	TGGCCA	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	6 cut(s)	65, 312, 347, 797, 980, 1009
MslI	CAYNNNNRTG	2 cut(s)	228, 423
Msp20I	TGGCCA	1 cut(s)	283
MspA1I	CMGCKG	2 cut(s)	266, 632
MspR9I	CCNGG	1 cut(s)	613
Mva1269I	GAATGC	4 cut(s)	204, 418, 430, 805
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	2 cut(s)	662, 677
MwoI	GCNNNNNNNGC	5 cut(s)	242, 617, 685, 694, 703
NdeII	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
NlaIII	CATG	2 cut(s)	233, 560
NspI	RCATGY	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	344
PctI	GAATGC	4 cut(s)	204, 418, 430, 805
PdmI	GAANNNNTTC	1 cut(s)	720
PkrI	GCNGC	7 cut(s)	92, 244, 508, 634, 666, 676, 687
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	611
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstI	CTGCAG	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	113, 128, 600
RsaNI	GTAC	3 cut(s)	112, 127, 599
RseI	CAYNNNNRTG	2 cut(s)	228, 423
SaqAI	TTAA	6 cut(s)	65, 312, 347, 797, 980, 1009
SatI	GCNGC	7 cut(s)	91, 243, 507, 633, 665, 675, 686
Sau3AI	GATC	6 cut(s)	79, 188, 637, 648, 958, 971
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	3 cut(s)	416, 697, 870
SfcI	CTRYAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	228, 423
SmlI	CTYRAG	2 cut(s)	47, 490
SmoI	CTYRAG	2 cut(s)	47, 490
Sse9I	AATT	2 cut(s)	6, 155
SseBI	AGGCCT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	39, 116, 521
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	36, 824
TaqI	TCGA	2 cut(s)	735, 957
TasI	AATT	2 cut(s)	6, 155
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	3 cut(s)	635, 667, 677
Tru1I	TTAA	6 cut(s)	65, 312, 347, 797, 980, 1009
Tru9I	TTAA	6 cut(s)	65, 312, 347, 797, 980, 1009
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	4 cut(s)	90, 242, 506, 685
TspDTI	ATGAA	3 cut(s)	71, 501, 560
TspGWI	ACGGA	2 cut(s)	246, 365
TspRI	CASTG	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	772
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	2 cut(s)	43, 105
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	3 cut(s)	39, 116, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.