Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

19047189 .. 19048513

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG133300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTAAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGCGCGATTTGTGAATATTAGAGATGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACAAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

198

Amino Acids

21.2

Weight (kDa)

8.12

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 52	3.2e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	3 - 47	1.3e-07	Ankyrin repeats (many copies)
Ank	PF00023	89 - 119	7.8e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	2 cut(s)	196, 345
AciI	CCGC	5 cut(s)	153, 249, 275, 287, 565
AclWI	GGATC	2 cut(s)	307, 367
AcoI	YGGCCR	2 cut(s)	121, 452
AgsI	TTSAA	4 cut(s)	243, 391, 466, 557
AjnI	CCWGG	2 cut(s)	138, 262
AluBI	AGCT	8 cut(s)	43, 176, 227, 407, 416, 437, 481, 500
AluI	AGCT	8 cut(s)	43, 176, 227, 407, 416, 437, 481, 500
Alw21I	GWGCWC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	307, 367
AoxI	GGCC	4 cut(s)	121, 141, 452, 513
ApeKI	GCWGC	6 cut(s)	8, 110, 155, 258, 277, 413
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	196, 347
AsuHPI	GGTGA	1 cut(s)	450
BalI	TGGCCA	2 cut(s)	123, 454
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	5 cut(s)	97, 142, 245, 264, 425
BccI	CCATC	3 cut(s)	350, 463, 593
BcgI	CGANNNNNNTGC	1 cut(s)	568
BciT130I	CCWGG	2 cut(s)	140, 264
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	9, 111, 156, 259, 278, 288, 414
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	7 cut(s)	10, 112, 157, 260, 279, 289, 415
Bme1390I	CCNGG	2 cut(s)	140, 264
BmrFI	CCNGG	2 cut(s)	140, 264
BmsI	GCATC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 216, 246
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	140, 264
BseDI	CCNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	5 cut(s)	97, 142, 245, 264, 425
BsgI	GTGCAG	2 cut(s)	357, 432
Bsh1236I	CGCG	2 cut(s)	196, 345
BshFI	GGCC	4 cut(s)	123, 143, 454, 515
BsiHKAI	GWGCWC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	375, 590
BsnI	GGCC	4 cut(s)	123, 143, 454, 515
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	24, 299, 340, 359
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	5 cut(s)	153, 249, 275, 287, 565
BspANI	GGCC	4 cut(s)	123, 143, 454, 515
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	2 cut(s)	196, 345
BspPI	GGATC	2 cut(s)	307, 367
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	24, 299, 340, 359
BssNAI	GTATAC	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	140, 264
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	196, 345
BstHHI	GCGC	2 cut(s)	196, 347
BstKTI	GATC	4 cut(s)	27, 302, 343, 362
BstMBI	GATC	4 cut(s)	24, 299, 340, 359
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 267, 335, 344, 413
BstNI	CCWGG	2 cut(s)	140, 264
BstSCI	CCNGG	2 cut(s)	138, 262
BstUI	CGCG	2 cut(s)	196, 345
BstV1I	GCAGC	5 cut(s)	97, 142, 245, 264, 425
BstX2I	RGATCY	2 cut(s)	24, 299
BstYI	RGATCY	2 cut(s)	24, 299
BstZ17I	GTATAC	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	123, 143, 454, 515
BtgZI	GCGATG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	2 cut(s)	196, 347
CviAII	CATG	7 cut(s)	17, 30, 125, 170, 183, 330, 401
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	26, 301, 342, 361
DpnII	GATC	4 cut(s)	24, 299, 340, 359
EaeI	YGGCCR	2 cut(s)	121, 452
EciI	GGCGGA	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	138, 262
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	7 cut(s)	20, 33, 128, 173, 186, 333, 404
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	7 cut(s)	16, 29, 124, 169, 182, 329, 400
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	7 cut(s)	9, 111, 156, 259, 278, 288, 414
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	7 cut(s)	9, 111, 156, 259, 278, 288, 414
GlaI	GCGC	2 cut(s)	195, 346
GluI	GCNGC	7 cut(s)	9, 111, 156, 259, 278, 288, 414
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	4 cut(s)	123, 143, 454, 515
HhaI	GCGC	2 cut(s)	196, 347
Hin1II	CATG	7 cut(s)	20, 33, 128, 173, 186, 333, 404
Hin6I	GCGC	2 cut(s)	194, 345
HinP1I	GCGC	2 cut(s)	194, 345
HindIII	AAGCTT	2 cut(s)	41, 498
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	596
Hpy188III	TCNNGA	2 cut(s)	305, 554
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	7 cut(s)	11, 16, 103, 280, 338, 413, 579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 267, 335, 344, 413
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	7 cut(s)	20, 33, 128, 173, 186, 333, 404
HspAI	GCGC	2 cut(s)	194, 345
Kzo9I	GATC	4 cut(s)	24, 299, 340, 359
LmnI	GCTCC	3 cut(s)	56, 224, 404
LpnPI	CCDG	8 cut(s)	125, 152, 231, 249, 276, 290, 431, 497
Lsp1109I	GCAGC	5 cut(s)	97, 142, 245, 264, 425
LweI	GCATC	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	4 cut(s)	26, 301, 342, 361
MboI	GATC	4 cut(s)	24, 299, 340, 359
MboII	GAAGA	2 cut(s)	102, 557
MflI	RGATCY	2 cut(s)	24, 299
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	2 cut(s)	123, 454
MluNI	TGGCCA	2 cut(s)	123, 454
MnlI	CCTC	7 cut(s)	146, 287, 453, 481, 484, 517, 532
Mox20I	TGGCCA	2 cut(s)	123, 454
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	123, 454
MseI	TTAA	4 cut(s)	48, 68, 483, 518
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	2 cut(s)	123, 454
MspA1I	CMGCKG	3 cut(s)	155, 277, 437
MspR9I	CCNGG	2 cut(s)	140, 264
Mva1269I	GAATGC	2 cut(s)	375, 590
MvaI	CCWGG	2 cut(s)	140, 264
MvnI	CGCG	2 cut(s)	196, 345
MwoI	GCNNNNNNNGC	5 cut(s)	255, 267, 335, 344, 413
NdeII	GATC	4 cut(s)	24, 299, 340, 359
NlaIII	CATG	7 cut(s)	20, 33, 128, 173, 186, 333, 404
NsiI	ATGCAT	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	515
PctI	GAATGC	2 cut(s)	375, 590
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	7 cut(s)	10, 112, 157, 260, 279, 289, 415
PshBI	ATTAAT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	138, 262
PspGI	CCWGG	2 cut(s)	138, 262
PsuI	RGATCY	2 cut(s)	24, 299
PvuII	CAGCTG	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	4 cut(s)	48, 68, 483, 518
SatI	GCNGC	7 cut(s)	9, 111, 156, 259, 278, 288, 414
Sau3AI	GATC	4 cut(s)	24, 299, 340, 359
ScrFI	CCNGG	2 cut(s)	140, 264
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	9 cut(s)	45, 178, 229, 409, 418, 439, 463, 483, 502
SfaNI	GCATC	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	399
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	5 cut(s)	153, 249, 275, 287, 565
SspI	AATATT	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	138, 262
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	48, 68, 483, 518
Tru9I	TTAA	4 cut(s)	48, 68, 483, 518
TseI	GCWGC	6 cut(s)	8, 110, 155, 258, 277, 413
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	4 cut(s)	102, 237, 417, 536
VspI	ATTAAT	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.