Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

70374196 .. 70378255

Gene Structure 4060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG436900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTCAGGGACTGAGTTGCGGAGCGAGTGACGAGCATGGGCTCTTCAGCGCCGTGCAACTTGGGGACCTGGAGACGGTGGAGGCTTTGGTAGAGAGAGACTCGGCTATCTTGCGTCACACCACCGTGTATGATCGTCACTCTGCTCTTCATATTGCTGCCGCTAATGGCCAGATCGAGATTCTTTCTCTGCTGTTAGAACGATCTGTAAATCCTGATGCGTTGAATCGTCACAAGCAGACTCCGCTGATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACCTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCTGCTGCTCAATCAAGTCATGTAGCTGTTTCATGGGGATTTGCACGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCCAGGCGAAGTAGGCCTGAATGTGTACATATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAACATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGGTAATTTCCTACCTTCCTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

327

Amino Acids

35.13

Weight (kDa)

6.48

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 106	4.2e-16	Ankyrin repeats (3 copies)
Ank_4	PF13637	50 - 99	2.3e-08	Ankyrin repeats (many copies)
Ank_5	PF13857	65 - 109	8.5e-06	Ankyrin repeats (many copies)
Ank_4	PF13637	85 - 130	9.6e-08	Ankyrin repeats (many copies)
Ank_2	PF12796	112 - 184	3.5e-10	Ankyrin repeats (3 copies)
Ank_4	PF13637	162 - 212	4.1e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	1 cut(s)	663
AciI	CCGC	6 cut(s)	21, 162, 245, 593, 605, 882
AclWI	GGATC	2 cut(s)	625, 685
AcoI	YGGCCR	3 cut(s)	169, 370, 770
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	226, 299, 561, 709, 784, 874
AjnI	CCWGG	4 cut(s)	69, 387, 497, 580
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	8 cut(s)	292, 425, 545, 725, 734, 755, 799, 818
AluI	AGCT	8 cut(s)	292, 425, 545, 725, 734, 755, 799, 818
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	2 cut(s)	68, 93
AlwI	GGATC	2 cut(s)	625, 685
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	6 cut(s)	169, 370, 390, 509, 770, 831
ApeKI	GCWGC	7 cut(s)	158, 257, 359, 404, 576, 595, 731
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	53, 665
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	3 cut(s)	171, 372, 772
BanII	GRGCYC	2 cut(s)	45, 547
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	7 cut(s)	145, 244, 346, 391, 563, 582, 743
BccI	CCATC	5 cut(s)	458, 668, 781, 910, 928
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	4 cut(s)	466, 500, 885, 919
BciT130I	CCWGG	4 cut(s)	71, 389, 499, 582
BcoDI	GTCTC	2 cut(s)	68, 93
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	9 cut(s)	159, 162, 258, 360, 405, 577, 596, 606, 732
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	9 cut(s)	160, 163, 259, 361, 406, 578, 597, 607, 733
Bme1390I	CCNGG	4 cut(s)	71, 389, 499, 582
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	4 cut(s)	71, 389, 499, 582
BmsI	GCATC	3 cut(s)	208, 503, 905
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	2 cut(s)	92, 371
Bpu1102I	GCTNAGC	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	942
BsaJI	CCNNGG	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 327, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	4 cut(s)	71, 389, 499, 582
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	3 cut(s)	494, 939, 943
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	5, 747, 942
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	7 cut(s)	145, 244, 346, 391, 563, 582, 743
BsgI	GTGCAG	2 cut(s)	675, 750
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	6 cut(s)	171, 372, 392, 511, 772, 833
BsiHKAI	GWGCWC	1 cut(s)	547
BslFI	GGGAC	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	68, 93
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	24, 80
BsmI	GAATGC	3 cut(s)	693, 907, 919
BsnI	GGCC	6 cut(s)	171, 372, 392, 511, 772, 833
Bsp1286I	GDGCHC	2 cut(s)	45, 547
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	6 cut(s)	21, 162, 245, 593, 605, 882
BspANI	GGCC	6 cut(s)	171, 372, 392, 511, 772, 833
BspCNI	CTCAG	3 cut(s)	6, 748, 943
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	625, 685
BspQI	GCTCTTC	2 cut(s)	50, 153
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
BssNAI	GTATAC	1 cut(s)	632
Bst1107I	GTATAC	1 cut(s)	632
Bst2UI	CCWGG	4 cut(s)	71, 389, 499, 582
Bst4CI	ACNGT	2 cut(s)	79, 127
Bst6I	CTCTTC	2 cut(s)	50, 153
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	14, 756, 951
BstF5I	GGATG	3 cut(s)	494, 939, 943
BstFNI	CGCG	1 cut(s)	663
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 665
BstKTI	GATC	7 cut(s)	136, 177, 206, 276, 620, 661, 680
BstMAI	GTCTC	2 cut(s)	68, 93
BstMBI	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
BstMWI	GCNNNNNNNGC	6 cut(s)	244, 508, 585, 653, 662, 731
BstNI	CCWGG	4 cut(s)	71, 389, 499, 582
BstSCI	CCNGG	4 cut(s)	69, 387, 497, 580
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	7 cut(s)	145, 244, 346, 391, 563, 582, 743
BstX2I	RGATCY	2 cut(s)	273, 617
BstYI	RGATCY	2 cut(s)	273, 617
BstZ17I	GTATAC	1 cut(s)	632
BsuRI	GGCC	6 cut(s)	171, 372, 392, 511, 772, 833
BtgZI	GCGATG	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	494, 939, 943
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	2 cut(s)	53, 665
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	8 cut(s)	38, 266, 279, 374, 419, 432, 648, 719
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	3 cut(s)	14, 756, 951
DpnI	GATC	7 cut(s)	135, 176, 205, 275, 619, 660, 679
DpnII	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
EaeI	YGGCCR	3 cut(s)	169, 370, 770
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Ecl136II	GAGCTC	1 cut(s)	545
Eco147I	AGGCCT	2 cut(s)	511, 833
Eco24I	GRGCYC	2 cut(s)	45, 547
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	69, 387, 497, 580
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	45, 547
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	8 cut(s)	41, 269, 282, 377, 422, 435, 651, 722
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FaqI	GGGAC	2 cut(s)	24, 80
FatI	CATG	8 cut(s)	37, 265, 278, 373, 418, 431, 647, 718
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	9 cut(s)	159, 162, 258, 360, 405, 577, 596, 606, 732
FokI	GGATG	3 cut(s)	481, 946, 950
FriOI	GRGCYC	2 cut(s)	45, 547
Fsp4HI	GCNGC	9 cut(s)	159, 162, 258, 360, 405, 577, 596, 606, 732
GlaI	GCGC	2 cut(s)	52, 664
GluI	GCNGC	9 cut(s)	159, 162, 258, 360, 405, 577, 596, 606, 732
GsuI	CTGGAG	2 cut(s)	92, 371
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	6 cut(s)	171, 372, 392, 511, 772, 833
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	53, 665
Hin1II	CATG	8 cut(s)	41, 269, 282, 377, 422, 435, 651, 722
Hin6I	GCGC	2 cut(s)	51, 663
HinP1I	GCGC	2 cut(s)	51, 663
HindIII	AAGCTT	2 cut(s)	290, 816
HinfI	GANTC	5 cut(s)	101, 181, 226, 241, 326
HphI	GGTGA	1 cut(s)	768
Hpy166II	GTNNAC	2 cut(s)	521, 632
Hpy188I	TCNGA	3 cut(s)	913, 925, 952
Hpy188III	TCNNGA	5 cut(s)	178, 215, 296, 623, 871
Hpy8I	GTNNAC	2 cut(s)	521, 632
HpyAV	CCTTC	2 cut(s)	341, 977
HpyCH4III	ACNGT	2 cut(s)	79, 127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	244, 508, 585, 653, 662, 731
HpyF3I	CTNAG	3 cut(s)	14, 756, 951
Hsp92II	CATG	8 cut(s)	41, 269, 282, 377, 422, 435, 651, 722
HspAI	GCGC	2 cut(s)	51, 663
Kzo9I	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	5 cut(s)	23, 305, 473, 542, 722
Lsp1109I	GCAGC	7 cut(s)	145, 244, 346, 391, 563, 582, 743
LweI	GCATC	3 cut(s)	208, 503, 905
MaeIII	GTNAC	5 cut(s)	29, 116, 137, 230, 884
MalI	GATC	7 cut(s)	135, 176, 205, 275, 619, 660, 679
MboI	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
MboII	GAAGA	4 cut(s)	37, 140, 351, 874
MflI	RGATCY	2 cut(s)	273, 617
MhlI	GDGCHC	2 cut(s)	45, 547
MlsI	TGGCCA	3 cut(s)	171, 372, 772
MluCI	AATT	1 cut(s)	957
MluNI	TGGCCA	3 cut(s)	171, 372, 772
MlyI	GAGTC	2 cut(s)	95, 235
Mox20I	TGGCCA	3 cut(s)	171, 372, 772
Mph1103I	ATGCAT	1 cut(s)	267
MscI	TGGCCA	3 cut(s)	171, 372, 772
MseI	TTAA	3 cut(s)	317, 801, 836
MslI	CAYNNNNRTG	3 cut(s)	125, 717, 912
Msp20I	TGGCCA	3 cut(s)	171, 372, 772
MspA1I	CMGCKG	3 cut(s)	247, 595, 755
MspR9I	CCNGG	4 cut(s)	71, 389, 499, 582
Mva1269I	GAATGC	3 cut(s)	693, 907, 919
MvaI	CCWGG	4 cut(s)	71, 389, 499, 582
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	6 cut(s)	244, 508, 585, 653, 662, 731
NdeII	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
NlaIII	CATG	8 cut(s)	41, 269, 282, 377, 422, 435, 651, 722
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	4 cut(s)	29, 116, 137, 230
NsiI	ATGCAT	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	125
PceI	AGGCCT	2 cut(s)	511, 833
PciSI	GCTCTTC	2 cut(s)	50, 153
PctI	GAATGC	3 cut(s)	693, 907, 919
PfeI	GAWTC	3 cut(s)	181, 226, 326
PkrI	GCNGC	9 cut(s)	160, 163, 259, 361, 406, 578, 597, 607, 733
PleI	GAGTC	2 cut(s)	95, 235
PpsI	GAGTC	2 cut(s)	95, 235
PpuMI	RGGWCCY	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	4 cut(s)	69, 387, 497, 580
PspGI	CCWGG	4 cut(s)	69, 387, 497, 580
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	273, 617
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	3 cut(s)	125, 717, 912
SacI	GAGCTC	1 cut(s)	547
SapI	GCTCTTC	2 cut(s)	50, 153
SaqAI	TTAA	3 cut(s)	317, 801, 836
SatI	GCNGC	9 cut(s)	159, 162, 258, 360, 405, 577, 596, 606, 732
Sau3AI	GATC	7 cut(s)	133, 174, 203, 273, 617, 658, 677
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	95, 235
ScrFI	CCNGG	4 cut(s)	71, 389, 499, 582
SduI	GDGCHC	2 cut(s)	45, 547
SfaNI	GCATC	3 cut(s)	208, 503, 905
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	3 cut(s)	125, 717, 912
Sse9I	AATT	1 cut(s)	957
SseBI	AGGCCT	2 cut(s)	511, 833
SsiI	CCGC	6 cut(s)	21, 162, 245, 593, 605, 882
SspI	AATATT	1 cut(s)	457
SstI	GAGCTC	1 cut(s)	547
StuI	AGGCCT	2 cut(s)	511, 833
StyD4I	CCNGG	4 cut(s)	69, 387, 497, 580
TaaI	ACNGT	2 cut(s)	79, 127
TaqI	TCGA	2 cut(s)	177, 324
TasI	AATT	1 cut(s)	957
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	2 cut(s)	164, 608
TfiI	GAWTC	3 cut(s)	181, 226, 326
Tru1I	TTAA	3 cut(s)	317, 801, 836
Tru9I	TTAA	3 cut(s)	317, 801, 836
TseFI	GTSAC	4 cut(s)	29, 116, 137, 230
TseI	GCWGC	7 cut(s)	158, 257, 359, 404, 576, 595, 731
Tsp45I	GTSAC	4 cut(s)	29, 116, 137, 230
TspDTI	ATGAA	2 cut(s)	140, 420
TspGWI	ACGGA	4 cut(s)	351, 555, 735, 854
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.