Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

72127496 .. 72138708

Gene Structure 11213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG501500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCGACGTAGCTTCCTCCAGACGAACTTTTGACTTGACTTGTAGACGTGCATGTCTAGAAGAGACGTACCATGCTCGTCATTATTCTCTTTACTGCTGCCTTTTACTACAACCAGAAACCGGGGTTGTTGTTGTGGATGAGGATGGAAAACCAGAAGACAGAGTTGGAGTGGCCTTGAAATGTCTTCCAAACTATGATCCTGCTACCTGTTTGTTCGAAACAACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGATTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGGGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCGAGGCGAAGTAGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCTGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATCGATGACAATCTTTCTGAGAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

315

Amino Acids

34.16

Weight (kDa)

7.17

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	65 - 130	4.6e-11	Ankyrin repeats (3 copies)
Ank_4	PF13637	80 - 125	3.3e-07	Ankyrin repeats (many copies)
Ank	PF00023	153 - 182	2.8e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
AccI	GTMKAC	2 cut(s)	46, 616
AccII	CGCG	1 cut(s)	648
AciI	CCGC	5 cut(s)	230, 387, 552, 590, 867
AclWI	GGATC	4 cut(s)	194, 610, 670, 926
AcoI	YGGCCR	3 cut(s)	3, 355, 755
AfaI	GTAC	2 cut(s)	71, 507
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	181, 284, 546, 694, 769, 859
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	372, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	8 cut(s)	14, 410, 530, 710, 719, 740, 784, 803
AluI	AGCT	8 cut(s)	14, 410, 530, 710, 719, 740, 784, 803
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	4 cut(s)	194, 610, 670, 926
AoxI	GGCC	7 cut(s)	3, 174, 355, 375, 494, 755, 816
ApeKI	GCWGC	7 cut(s)	99, 242, 344, 389, 561, 580, 716
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	753
AsuII	TTCGAA	1 cut(s)	219
BalI	TGGCCA	2 cut(s)	357, 757
BanII	GRGCYC	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	165, 179
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	7 cut(s)	86, 229, 331, 376, 548, 567, 728
BccI	CCATC	5 cut(s)	140, 443, 653, 766, 895
BcgI	CGANNNNNNTGC	4 cut(s)	451, 485, 870, 904
BciT130I	CCWGG	2 cut(s)	374, 567
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	8 cut(s)	100, 243, 345, 390, 562, 581, 591, 717
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	8 cut(s)	101, 244, 346, 391, 563, 582, 592, 718
Bme1390I	CCNGG	3 cut(s)	124, 374, 567
BmgBI	CACGTC	1 cut(s)	50
BmrFI	CCNGG	3 cut(s)	124, 374, 567
BmsI	GCATC	2 cut(s)	488, 890
BpiI	GAAGAC	2 cut(s)	165, 179
BpmI	CTGGAG	2 cut(s)	4, 356
Bpu1102I	GCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	123, 565
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	374, 567
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	2 cut(s)	123, 565
BseGI	GGATG	2 cut(s)	145, 151
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	732, 927
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	806
BseXI	GCAGC	7 cut(s)	86, 229, 331, 376, 548, 567, 728
BsgI	GTGCAG	2 cut(s)	660, 735
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	7 cut(s)	5, 176, 357, 377, 496, 757, 818
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmI	GAATGC	3 cut(s)	678, 892, 904
BsnI	GGCC	7 cut(s)	5, 176, 357, 377, 496, 757, 818
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
Bsp1720I	GCTNAGC	1 cut(s)	741
BspACI	CCGC	5 cut(s)	230, 387, 552, 590, 867
BspANI	GGCC	7 cut(s)	5, 176, 357, 377, 496, 757, 818
BspCNI	CTCAG	2 cut(s)	733, 928
BspDI	ATCGAT	1 cut(s)	921
BspFNI	CGCG	1 cut(s)	648
BspPI	GGATC	4 cut(s)	194, 610, 670, 926
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	123, 565
BssMI	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
BssNAI	GTATAC	1 cut(s)	617
Bst1107I	GTATAC	1 cut(s)	617
Bst2UI	CCWGG	2 cut(s)	374, 567
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	509
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	741, 936
BstF5I	GGATG	2 cut(s)	145, 151
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	6 cut(s)	202, 261, 605, 646, 665, 921
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 493, 558, 570, 638, 647, 716
BstNI	CCWGG	2 cut(s)	374, 567
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	3 cut(s)	122, 372, 565
BstSNI	TACGTA	1 cut(s)	509
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	7 cut(s)	86, 229, 331, 376, 548, 567, 728
BstV2I	GAAGAC	2 cut(s)	165, 179
BstX2I	RGATCY	2 cut(s)	258, 602
BstYI	RGATCY	2 cut(s)	258, 602
BstZ17I	GTATAC	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	7 cut(s)	5, 176, 357, 377, 496, 757, 818
BsuTUI	ATCGAT	1 cut(s)	921
BtgZI	GCGATG	1 cut(s)	873
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	145, 151
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	2 cut(s)	70, 506
CviAII	CATG	9 cut(s)	54, 74, 251, 264, 359, 404, 417, 633, 704
CviQI	GTAC	2 cut(s)	70, 506
DdeI	CTNAG	2 cut(s)	741, 936
DpnI	GATC	6 cut(s)	201, 260, 604, 645, 664, 920
DpnII	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	3 cut(s)	3, 355, 755
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	530
Eco105I	TACGTA	1 cut(s)	509
Eco147I	AGGCCT	2 cut(s)	496, 818
Eco24I	GRGCYC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	372, 565
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	9 cut(s)	57, 77, 254, 267, 362, 407, 420, 636, 707
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FatI	CATG	9 cut(s)	53, 73, 250, 263, 358, 403, 416, 632, 703
FblI	GTMKAC	2 cut(s)	46, 616
Fnu4HI	GCNGC	8 cut(s)	100, 243, 345, 390, 562, 581, 591, 717
FokI	GGATG	2 cut(s)	152, 158
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	8 cut(s)	100, 243, 345, 390, 562, 581, 591, 717
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	8 cut(s)	100, 243, 345, 390, 562, 581, 591, 717
GsuI	CTGGAG	2 cut(s)	4, 356
HaeIII	GGCC	7 cut(s)	5, 176, 357, 377, 496, 757, 818
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	9 cut(s)	57, 77, 254, 267, 362, 407, 420, 636, 707
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	2 cut(s)	277, 311
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	753
Hpy166II	GTNNAC	3 cut(s)	47, 506, 617
Hpy188I	TCNGA	3 cut(s)	898, 910, 937
Hpy188III	TCNNGA	5 cut(s)	21, 59, 281, 608, 856
Hpy8I	GTNNAC	3 cut(s)	47, 506, 617
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	4 cut(s)	9, 49, 68, 508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 493, 558, 570, 638, 647, 716
HpyF3I	CTNAG	2 cut(s)	741, 936
HpySE526I	ACGT	4 cut(s)	9, 49, 68, 508
Hsp92II	CATG	9 cut(s)	57, 77, 254, 267, 362, 407, 420, 636, 707
HspAI	GCGC	1 cut(s)	648
Kzo9I	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
LmnI	GCTCC	4 cut(s)	290, 458, 527, 707
Lsp1109I	GCAGC	7 cut(s)	86, 229, 331, 376, 548, 567, 728
LweI	GCATC	2 cut(s)	488, 890
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	4 cut(s)	9, 49, 68, 508
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	6 cut(s)	201, 260, 604, 645, 664, 920
MboI	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
MboII	GAAGA	5 cut(s)	74, 170, 179, 336, 859
MflI	RGATCY	2 cut(s)	258, 602
MhlI	GDGCHC	1 cut(s)	532
MlsI	TGGCCA	2 cut(s)	357, 757
MluNI	TGGCCA	2 cut(s)	357, 757
MmeI	TCCRAC	1 cut(s)	148
Mox20I	TGGCCA	2 cut(s)	357, 757
Mph1103I	ATGCAT	1 cut(s)	252
MscI	TGGCCA	2 cut(s)	357, 757
MseI	TTAA	3 cut(s)	302, 786, 821
MslI	CAYNNNNRTG	2 cut(s)	702, 897
Msp20I	TGGCCA	2 cut(s)	357, 757
MspA1I	CMGCKG	2 cut(s)	389, 740
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	124, 374, 567
Mva1269I	GAATGC	3 cut(s)	678, 892, 904
MvaI	CCWGG	2 cut(s)	374, 567
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	7 cut(s)	11, 493, 558, 570, 638, 647, 716
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
NlaIII	CATG	9 cut(s)	57, 77, 254, 267, 362, 407, 420, 636, 707
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	219
PceI	AGGCCT	2 cut(s)	496, 818
PctI	GAATGC	3 cut(s)	678, 892, 904
PfeI	GAWTC	2 cut(s)	277, 311
PkrI	GCNGC	8 cut(s)	101, 244, 346, 391, 563, 582, 592, 718
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	372, 565
PspGI	CCWGG	2 cut(s)	372, 565
PsuI	RGATCY	2 cut(s)	258, 602
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	2 cut(s)	71, 507
RsaNI	GTAC	2 cut(s)	70, 506
RseI	CAYNNNNRTG	2 cut(s)	702, 897
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	3 cut(s)	302, 786, 821
SatI	GCNGC	8 cut(s)	100, 243, 345, 390, 562, 581, 591, 717
Sau3AI	GATC	6 cut(s)	199, 258, 602, 643, 662, 918
ScrFI	CCNGG	3 cut(s)	124, 374, 567
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	488, 890
SfuI	TTCGAA	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	702, 897
SnaBI	TACGTA	1 cut(s)	509
SseBI	AGGCCT	2 cut(s)	496, 818
SsiI	CCGC	5 cut(s)	230, 387, 552, 590, 867
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	532
StuI	AGGCCT	2 cut(s)	496, 818
StyD4I	CCNGG	3 cut(s)	122, 372, 565
TaiI	ACGT	4 cut(s)	12, 52, 71, 511
TaqI	TCGA	4 cut(s)	219, 309, 482, 921
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	277, 311
Tru1I	TTAA	3 cut(s)	302, 786, 821
Tru9I	TTAA	3 cut(s)	302, 786, 821
TseI	GCWGC	7 cut(s)	99, 242, 344, 389, 561, 580, 716
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	4 cut(s)	336, 540, 720, 839
VspI	ATTAAT	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	57
XmiI	GTMKAC	2 cut(s)	46, 616
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.