pycom03g07860

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
6229369 .. 6232110
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07860.8

Sequence Viewer

Length: 1335 bp
ATGGGTCAAGGGTTGAGTTGCAGAGAGAGTGACGAACATGGGCTGTTCCGAGCCGTACAGTTTGGGGAGCTGGACACCGTGGAATCTGTGTTAGAGAGAGACCCAACTCTCCTCCGCCACTCCACCGTCTACGACCGCCACTCTGCTCTTCATATCGCCGCCGCGAACGGCCAGATCGAGATTCTTTCTATGCTGTTAGAACGATCTGTGAATCCAGATGCGTTAAATCGTCACAAGCAGACTCCATTGATGTTGGCTGCAATGCATGGCAAGATCTCCTGCGTGCAAAAGCTTCTTGACGCAGGAGCAAACGTATTGATGTTTGATTCCCTTAATGGAAGAACCTGCTTGCATTACGCCGCTTACTATGGCCATTCCGATTGCCTTCAAGCTATTGTTTCTGCTGCTCATTCGAGTCCTGTTTCTGTTTCCTGGGGATTTGCACGATTTATAAATATTAGGGATGGTAGAGGAGCAACACCGTTGCATTTGGCGGCACGTCGAAGTAGGCCTGAATGTGTACGTATTCTGTTAGACAACGGGGCTCTTGTTTCTGCTTCAACGGGTGGTTATGGCTGTCCTGGGAGCACTCCACTTCATTTGGCGGCTAGAGGGGGATCTCTGGATTGCATACGCGGATTGTTGGCATGGGGTGCAGATCGTGTTCAAAGAGATTCATCCGGGAGAATACCATACATAGTTGCTTTGAAACACAAACACGGAGCTTGTGCGGCCATGCTAAATCCTTCATCAGCTGAGCCTCTTGTGTGGCCAGCACCCTTAAAGTTTATTAGTGAGCTTAATCATGAAACAAAAGCTCTGCTAGAACAGGCCTTAATGGAGGCAAACAGGGAGAGGGAGAAGAACATCTTGAAAGGAACCGTTTACTCACTTCCATCTCCGTCACATTCTGATACATGCATGGATGACAATATATCTGTGGAAAGCGATTTAGATCTATGCTGCATATGCTTTGAGCAGGTGTGTACAATTGAAGTCCAGAACTGCGGTCACCAAATGTGTGCACAATGCACTCTAGCCCTCTGCTGCCACAACAAGCCTAACCCAACTACATTATGCCTAACGCCACCAGTTTGCCCATTCTGCCGAAGCCCCATTGCCCATCTGCTAGTTGCAAAGATCAAAAGTTGCGATGATGGTGATCATGACACCGCAGATAACAATTCCTCCAAGCTAAGAAAGGCAAGGAGGTCCCGAAACTTCAGTGAGGGCAGCAGCAGCTTCAAGGGCTTATCGGCACTCGGTTCTTTGGGGAAGATGGGCGGCCGTGGCTCAGGCATTATTGCTGAAAATGAATGGGTTGACAAACCTTGA

Protein Analysis

445

Amino Acids

48.03

Weight (kDa)

7.24

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AarI CACCTGC 1 cut(s) 970
Acc36I ACCTGC 2 cut(s) 353, 970
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 164, 636
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 5 cut(s) 169, 370, 732, 770, 1285
AcuI CTGAAG 1 cut(s) 1207
AfaI GTAC 3 cut(s) 57, 522, 988
AgsI TTSAA 7 cut(s) 389, 561, 668, 709, 874, 995, 1246
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 431, 580
AluBI AGCT 9 cut(s) 70, 292, 392, 725, 755, 799, 818, 1195, 1242
AluI AGCT 9 cut(s) 70, 292, 392, 725, 755, 799, 818, 1195, 1242
Alw21I GWGCWC 2 cut(s) 590, 1027
Alw26I GTCTC 1 cut(s) 93
Alw44I GTGCAC 1 cut(s) 1023
AlwI GGATC 1 cut(s) 625
AoxI GGCC 7 cut(s) 169, 370, 509, 732, 770, 831, 1285
ApaLI GTGCAC 1 cut(s) 1023
ApeKI GCWGC 7 cut(s) 257, 404, 963, 1047, 1233, 1236, 1239
AspS9I GGNCC 1 cut(s) 1212
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 1004, 1172
AvaII GGWCC 1 cut(s) 1212
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 2 cut(s) 372, 772
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 590, 1027
BbvI GCAGC 7 cut(s) 244, 391, 950, 1034, 1245, 1248, 1251
BccI CCATC 5 cut(s) 458, 904, 1131, 1151, 1273
BceAI ACGGC 3 cut(s) 38, 184, 1272
BciT130I CCWGG 2 cut(s) 433, 582
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 4 cut(s) 609, 824, 1037, 1130
BfuAI ACCTGC 2 cut(s) 353, 970
BglII AGATCT 2 cut(s) 273, 955
BlpI GCTNAGC 1 cut(s) 756
Bme1390I CCNGG 3 cut(s) 433, 582, 682
Bme18I GGWCC 1 cut(s) 1212
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 1212
BmiI GGNNCC 2 cut(s) 880, 1214
BmrFI CCNGG 3 cut(s) 433, 582, 682
BmsI GCATC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 1294
Bpu1102I GCTNAGC 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 524
BsaBI GATNNNNATC 2 cut(s) 954, 1161
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 78, 432, 581, 1288
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 1172, 1202
Bse1I ACTGG 1 cut(s) 1091
Bse3DI GCAATG 2 cut(s) 267, 1116
Bse8I GATNNNNATC 2 cut(s) 954, 1161
BseBI CCWGG 2 cut(s) 433, 582
BseDI CCNNGG 4 cut(s) 78, 432, 581, 1288
BseGI GGATG 3 cut(s) 469, 677, 931
BseJI GATNNNNATC 2 cut(s) 954, 1161
BseMI GCAATG 2 cut(s) 267, 1116
BseMII CTCAG 2 cut(s) 747, 1308
BseNI ACTGG 1 cut(s) 1091
BseRI GAGGAG 2 cut(s) 101, 486
BseSI GKGCMC 1 cut(s) 1027
BseX3I CGGCCG 1 cut(s) 1285
BseXI GCAGC 7 cut(s) 244, 391, 950, 1034, 1245, 1248, 1251
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 2 cut(s) 164, 636
Bsh1285I CGRYCG 2 cut(s) 136, 1288
BshFI GGCC 7 cut(s) 171, 372, 511, 734, 772, 833, 1287
BsiEI CGRYCG 2 cut(s) 136, 1288
BsiHKAI GWGCWC 2 cut(s) 590, 1027
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 1198
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 1198
BsnI GGCC 7 cut(s) 171, 372, 511, 734, 772, 833, 1287
Bso31I GGTCTC 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 547, 590, 1027
Bsp1407I TGTACA 1 cut(s) 986
Bsp143I GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
Bsp1720I GCTNAGC 1 cut(s) 756
BspANI GGCC 7 cut(s) 171, 372, 511, 734, 772, 833, 1287
BspCNI CTCAG 2 cut(s) 748, 1307
BspFNI CGCG 2 cut(s) 164, 636
BspHI TCATGA 2 cut(s) 805, 1165
BspLI GGNNCC 2 cut(s) 880, 1214
BspMI ACCTGC 2 cut(s) 353, 970
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 2 cut(s) 267, 1116
BsrGI TGTACA 1 cut(s) 986
BsrI ACTGG 1 cut(s) 1091
BssECI CCNNGG 4 cut(s) 78, 432, 581, 1288
BssMI GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
Bst2UI CCWGG 2 cut(s) 433, 582
Bst4CI ACNGT 5 cut(s) 60, 79, 127, 483, 883
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 986
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 284, 350, 774
BstDEI CTNAG 3 cut(s) 756, 1196, 1294
BstDSI CCRYGG 2 cut(s) 78, 1288
BstEII GGTNACC 1 cut(s) 1010
BstF5I GGATG 3 cut(s) 469, 677, 931
BstFNI CGCG 2 cut(s) 164, 636
BstKTI GATC 8 cut(s) 177, 206, 276, 620, 661, 958, 1143, 1165
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
BstMCI CGRYCG 2 cut(s) 136, 1288
BstMWI GCNNNNNNNGC 7 cut(s) 653, 731, 969, 1104, 1239, 1248, 1290
BstNI CCWGG 2 cut(s) 433, 582
BstNSI RCATGY 1 cut(s) 921
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 3 cut(s) 431, 580, 680
BstSLI GKGCMC 1 cut(s) 1027
BstSNI TACGTA 1 cut(s) 524
BstUI CGCG 2 cut(s) 164, 636
BstV1I GCAGC 7 cut(s) 244, 391, 950, 1034, 1245, 1248, 1251
BstX2I RGATCY 3 cut(s) 273, 617, 955
BstYI RGATCY 3 cut(s) 273, 617, 955
BstZI CGGCCG 1 cut(s) 1285
BsuRI GGCC 7 cut(s) 171, 372, 511, 734, 772, 833, 1287
BtgI CCRYGG 2 cut(s) 78, 1288
BtgZI GCGATG 1 cut(s) 1167
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 3 cut(s) 469, 677, 931
BtsIMutI CAGTG 1 cut(s) 1231
BveI ACCTGC 2 cut(s) 353, 970
Cac8I GCNNGC 3 cut(s) 284, 350, 774
CciI TCATGA 2 cut(s) 805, 1165
Cfr13I GGNCC 1 cut(s) 1212
CseI GACGC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 56, 521, 987
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviAII CATG 8 cut(s) 38, 266, 648, 736, 806, 918, 922, 1166
CviQI GTAC 3 cut(s) 56, 521, 987
DdeI CTNAG 3 cut(s) 756, 1196, 1294
DpnI GATC 8 cut(s) 176, 205, 275, 619, 660, 957, 1142, 1164
DpnII GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
EaeI YGGCCR 5 cut(s) 169, 370, 732, 770, 1285
EagI CGGCCG 1 cut(s) 1285
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 1285
Eco105I TACGTA 1 cut(s) 524
Eco147I AGGCCT 2 cut(s) 511, 833
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 1212
Eco52I CGGCCG 1 cut(s) 1285
Eco57I CTGAAG 1 cut(s) 1207
Eco91I GGTNACC 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 1212
EcoO65I GGTNACC 1 cut(s) 1010
EcoRII CCWGG 2 cut(s) 431, 580
EcoT22I ATGCAT 2 cut(s) 267, 923
EcoT38I GRGCYC 1 cut(s) 547
FaeI CATG 8 cut(s) 41, 269, 651, 739, 809, 921, 925, 1169
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 1 cut(s) 1198
FatI CATG 8 cut(s) 37, 265, 647, 735, 805, 917, 921, 1165
FauNDI CATATG 1 cut(s) 968
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 1 cut(s) 129
FokI GGATG 3 cut(s) 476, 664, 938
FriOI GRGCYC 1 cut(s) 547
FspBI CTAG 4 cut(s) 609, 824, 1037, 1130
HaeIII GGCC 7 cut(s) 171, 372, 511, 734, 772, 833, 1287
HapII CCGG 1 cut(s) 681
HgaI GACGC 1 cut(s) 308
Hin1II CATG 8 cut(s) 41, 269, 651, 739, 809, 921, 925, 1169
HincII GTYRAC 1 cut(s) 1324
HindII GTYRAC 1 cut(s) 1324
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 7 cut(s) 83, 181, 211, 241, 326, 415, 674
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 1004, 1172
Hpy166II GTNNAC 6 cut(s) 130, 521, 886, 987, 1025, 1324
Hpy188I TCNGA 3 cut(s) 50, 379, 913
Hpy188III TCNNGA 9 cut(s) 178, 215, 296, 623, 806, 871, 1000, 1166, 1215
Hpy8I GTNNAC 6 cut(s) 130, 521, 886, 987, 1025, 1324
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 395, 756
HpyCH4III ACNGT 5 cut(s) 60, 79, 127, 483, 883
HpyCH4IV ACGT 3 cut(s) 312, 499, 523
HpyF10VI GCNNNNNNNGC 7 cut(s) 653, 731, 969, 1104, 1239, 1248, 1290
HpyF3I CTNAG 3 cut(s) 756, 1196, 1294
HpySE526I ACGT 3 cut(s) 312, 499, 523
Hsp92II CATG 8 cut(s) 41, 269, 651, 739, 809, 921, 925, 1169
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 5 cut(s) 67, 305, 473, 585, 722
Lsp1109I GCAGC 7 cut(s) 244, 391, 950, 1034, 1245, 1248, 1251
LweI GCATC 1 cut(s) 208
MaeI CTAG 4 cut(s) 609, 824, 1037, 1130
MaeII ACGT 3 cut(s) 312, 499, 523
MaeIII GTNAC 4 cut(s) 29, 230, 903, 1010
MalI GATC 8 cut(s) 176, 205, 275, 619, 660, 957, 1142, 1164
MboI GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
MboII GAAGA 4 cut(s) 140, 351, 874, 1288
MfeI CAATTG 1 cut(s) 990
MflI RGATCY 3 cut(s) 273, 617, 955
MhlI GDGCHC 3 cut(s) 547, 590, 1027
MlsI TGGCCA 2 cut(s) 372, 772
MluCI AATT 2 cut(s) 990, 1183
MluNI TGGCCA 2 cut(s) 372, 772
MlyI GAGTC 2 cut(s) 235, 424
Mox20I TGGCCA 2 cut(s) 372, 772
Mph1103I ATGCAT 2 cut(s) 267, 923
MscI TGGCCA 2 cut(s) 372, 772
MseI TTAA 5 cut(s) 224, 333, 782, 801, 836
Msp20I TGGCCA 2 cut(s) 372, 772
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 3 cut(s) 433, 582, 682
MunI CAATTG 1 cut(s) 990
MvaI CCWGG 2 cut(s) 433, 582
MvnI CGCG 2 cut(s) 164, 636
MwoI GCNNNNNNNGC 7 cut(s) 653, 731, 969, 1104, 1239, 1248, 1290
NciI CCSGG 1 cut(s) 682
NdeI CATATG 1 cut(s) 968
NdeII GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
NlaIII CATG 8 cut(s) 41, 269, 651, 739, 809, 921, 925, 1169
NlaIV GGNNCC 2 cut(s) 880, 1214
NmuCI GTSAC 4 cut(s) 29, 230, 903, 1010
NsiI ATGCAT 2 cut(s) 267, 923
NspI RCATGY 1 cut(s) 921
PagI TCATGA 2 cut(s) 805, 1165
PaqCI CACCTGC 1 cut(s) 970
PceI AGGCCT 2 cut(s) 511, 833
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 5 cut(s) 83, 181, 211, 326, 674
PfoI TCCNGGA 1 cut(s) 680
PleI GAGTC 2 cut(s) 235, 423
PpsI GAGTC 2 cut(s) 235, 423
Ppu21I YACGTR 1 cut(s) 524
PpuMI RGGWCCY 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 1212
Psp6I CCWGG 2 cut(s) 431, 580
PspEI GGTNACC 1 cut(s) 1010
PspGI CCWGG 2 cut(s) 431, 580
PspN4I GGNNCC 2 cut(s) 880, 1214
PspPI GGNCC 1 cut(s) 1212
PspPPI RGGWCCY 1 cut(s) 1212
PsuI RGATCY 3 cut(s) 273, 617, 955
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 3 cut(s) 57, 522, 988
RsaNI GTAC 3 cut(s) 56, 521, 987
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 5 cut(s) 224, 333, 782, 801, 836
Sau3AI GATC 8 cut(s) 174, 203, 273, 617, 658, 955, 1140, 1162
Sau96I GGNCC 1 cut(s) 1212
SchI GAGTC 2 cut(s) 235, 424
ScrFI CCNGG 3 cut(s) 433, 582, 682
SduI GDGCHC 3 cut(s) 547, 590, 1027
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 1212
SnaBI TACGTA 1 cut(s) 524
Sse9I AATT 2 cut(s) 990, 1183
SseBI AGGCCT 2 cut(s) 511, 833
SspI AATATT 1 cut(s) 457
SspMI CTAG 4 cut(s) 609, 824, 1037, 1130
StuI AGGCCT 2 cut(s) 511, 833
StyD4I CCNGG 3 cut(s) 431, 580, 680
TaaI ACNGT 5 cut(s) 60, 79, 127, 483, 883
TaiI ACGT 3 cut(s) 315, 502, 526
TaqI TCGA 3 cut(s) 177, 413, 502
TasI AATT 2 cut(s) 990, 1183
TatI WGTACW 1 cut(s) 986
TauI GCSGC 7 cut(s) 161, 164, 362, 497, 608, 734, 1287
TfiI GAWTC 5 cut(s) 83, 181, 211, 326, 674
Tru1I TTAA 5 cut(s) 224, 333, 782, 801, 836
Tru9I TTAA 5 cut(s) 224, 333, 782, 801, 836
TscAI CASTG 1 cut(s) 1231
TseFI GTSAC 4 cut(s) 29, 230, 903, 1010
TseI GCWGC 7 cut(s) 257, 404, 963, 1047, 1233, 1236, 1239
Tsp45I GTSAC 4 cut(s) 29, 230, 903, 1010
TspDTI ATGAA 6 cut(s) 140, 587, 666, 738, 822, 1329
TspGWI ACGGA 2 cut(s) 735, 891
TspRI CASTG 1 cut(s) 1231
VneI GTGCAC 1 cut(s) 1023
VpaK11BI GGWCC 1 cut(s) 1212
XceI RCATGY 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 4 cut(s) 609, 824, 1037, 1130
Zsp2I ATGCAT 2 cut(s) 267, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.