Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

50543398 .. 50544763

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGGGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCTGTTGCATTTAGCATCGAGGCGAAGTAGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGGGAAGAATTAAACTCAAACTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTCGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGGCTCAAAGAGATGGATCGGGGTATAATTCCATTTCCATCAATATTCAAAAATCAAATTCTGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGGTAATTTCCTACCTTCCTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

263

Amino Acids

28.58

Weight (kDa)

7.65

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 52	4.2e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	3 - 47	1.1e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	52 - 143	1.6e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	5 cut(s)	153, 318, 362, 374, 690
AclWI	GGATC	2 cut(s)	394, 453
AcoI	YGGCCR	2 cut(s)	121, 578
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	50, 312, 478, 517, 592, 682
AjnI	CCWGG	2 cut(s)	138, 349
AluBI	AGCT	8 cut(s)	43, 176, 296, 533, 542, 563, 607, 626
AluI	AGCT	8 cut(s)	43, 176, 296, 533, 542, 563, 607, 626
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	394, 453
AoxI	GGCC	5 cut(s)	121, 141, 260, 578, 639
ApeKI	GCWGC	5 cut(s)	8, 110, 155, 364, 539
ApoI	RAATTY	1 cut(s)	486
AseI	ATTAAT	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	576
BalI	TGGCCA	2 cut(s)	123, 580
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	4 cut(s)	97, 142, 351, 551
BccI	CCATC	6 cut(s)	209, 436, 475, 589, 718, 736
BcgI	CGANNNNNNTGC	4 cut(s)	217, 251, 693, 727
BciT130I	CCWGG	2 cut(s)	140, 351
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	6 cut(s)	9, 111, 156, 365, 375, 540
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	6 cut(s)	10, 112, 157, 366, 376, 541
Bme1390I	CCNGG	2 cut(s)	140, 351
BmrFI	CCNGG	2 cut(s)	140, 351
BmsI	GCATC	2 cut(s)	254, 713
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 285, 315
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	2 cut(s)	140, 351
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	747, 751
BseJI	GATNNNNATC	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	482, 555, 750
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	4 cut(s)	97, 142, 351, 551
BsgI	GTGCAG	2 cut(s)	444, 558
BshFI	GGCC	5 cut(s)	123, 143, 262, 580, 641
BsiHKAI	GWGCWC	1 cut(s)	298
BsmI	GAATGC	3 cut(s)	501, 715, 727
BsnI	GGCC	5 cut(s)	123, 143, 262, 580, 641
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	24, 386, 427, 445
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	5 cut(s)	153, 318, 362, 374, 690
BspANI	GGCC	5 cut(s)	123, 143, 262, 580, 641
BspCNI	CTCAG	3 cut(s)	483, 556, 751
BspPI	GGATC	2 cut(s)	394, 453
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	4 cut(s)	24, 386, 427, 445
BssNAI	GTATAC	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	140, 351
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	491, 564, 759
BstF5I	GGATG	2 cut(s)	747, 751
BstKTI	GATC	4 cut(s)	27, 389, 430, 448
BstMBI	GATC	4 cut(s)	24, 386, 427, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 354, 422, 539
BstNI	CCWGG	2 cut(s)	140, 351
BstSCI	CCNGG	2 cut(s)	138, 349
BstSNI	TACGTA	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	97, 142, 351, 551
BstX2I	RGATCY	2 cut(s)	24, 386
BstYI	RGATCY	2 cut(s)	24, 386
BstZ17I	GTATAC	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	123, 143, 262, 580, 641
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	747, 751
Cac8I	GCNNGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	7 cut(s)	17, 30, 125, 170, 183, 417, 527
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	491, 564, 759
DpnI	GATC	4 cut(s)	26, 388, 429, 447
DpnII	GATC	4 cut(s)	24, 386, 427, 445
EaeI	YGGCCR	2 cut(s)	121, 578
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	296
Eco105I	TACGTA	1 cut(s)	275
Eco147I	AGGCCT	2 cut(s)	262, 641
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	138, 349
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	7 cut(s)	20, 33, 128, 173, 186, 420, 530
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	7 cut(s)	16, 29, 124, 169, 182, 416, 526
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	6 cut(s)	9, 111, 156, 365, 375, 540
FokI	GGATG	2 cut(s)	754, 758
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	6 cut(s)	9, 111, 156, 365, 375, 540
GluI	GCNGC	6 cut(s)	9, 111, 156, 365, 375, 540
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	5 cut(s)	123, 143, 262, 580, 641
Hin1II	CATG	7 cut(s)	20, 33, 128, 173, 186, 420, 530
HindIII	AAGCTT	2 cut(s)	41, 624
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	2 cut(s)	272, 401
Hpy188I	TCNGA	4 cut(s)	492, 721, 733, 760
Hpy188III	TCNNGA	3 cut(s)	47, 392, 679
Hpy8I	GTNNAC	2 cut(s)	272, 401
HpyAV	CCTTC	2 cut(s)	92, 785
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	9 cut(s)	11, 16, 103, 238, 367, 425, 539, 704, 727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 354, 422, 539
HpyF3I	CTNAG	3 cut(s)	491, 564, 759
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	7 cut(s)	20, 33, 128, 173, 186, 420, 530
Kzo9I	GATC	4 cut(s)	24, 386, 427, 445
LmnI	GCTCC	4 cut(s)	56, 224, 293, 530
LpnPI	CCDG	9 cut(s)	125, 152, 245, 276, 300, 336, 363, 557, 623
Lsp1109I	GCAGC	4 cut(s)	97, 142, 351, 551
LweI	GCATC	2 cut(s)	254, 713
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	4 cut(s)	26, 388, 429, 447
MboI	GATC	4 cut(s)	24, 386, 427, 445
MboII	GAAGA	3 cut(s)	102, 341, 682
MflI	RGATCY	2 cut(s)	24, 386
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	2 cut(s)	123, 580
MluCI	AATT	4 cut(s)	332, 456, 486, 765
MluNI	TGGCCA	2 cut(s)	123, 580
Mox20I	TGGCCA	2 cut(s)	123, 580
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	123, 580
MseI	TTAA	4 cut(s)	68, 335, 609, 644
MslI	CAYNNNNRTG	2 cut(s)	525, 720
Msp20I	TGGCCA	2 cut(s)	123, 580
MspA1I	CMGCKG	3 cut(s)	155, 364, 563
MspR9I	CCNGG	2 cut(s)	140, 351
Mva1269I	GAATGC	3 cut(s)	501, 715, 727
MvaI	CCWGG	2 cut(s)	140, 351
MwoI	GCNNNNNNNGC	4 cut(s)	259, 354, 422, 539
NdeII	GATC	4 cut(s)	24, 386, 427, 445
NlaIII	CATG	7 cut(s)	20, 33, 128, 173, 186, 420, 530
NsiI	ATGCAT	1 cut(s)	18
PceI	AGGCCT	2 cut(s)	262, 641
PctI	GAATGC	3 cut(s)	501, 715, 727
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	6 cut(s)	10, 112, 157, 366, 376, 541
Ppu21I	YACGTR	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	138, 349
PspGI	CCWGG	2 cut(s)	138, 349
PsuI	RGATCY	2 cut(s)	24, 386
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	2 cut(s)	525, 720
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	68, 335, 609, 644
SatI	GCNGC	6 cut(s)	9, 111, 156, 365, 375, 540
Sau3AI	GATC	4 cut(s)	24, 386, 427, 445
ScrFI	CCNGG	2 cut(s)	140, 351
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	254, 713
SmiMI	CAYNNNNRTG	2 cut(s)	525, 720
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	4 cut(s)	332, 456, 486, 765
SseBI	AGGCCT	2 cut(s)	262, 641
SsiI	CCGC	5 cut(s)	153, 318, 362, 374, 690
SspI	AATATT	2 cut(s)	208, 474
SstI	GAGCTC	1 cut(s)	298
StuI	AGGCCT	2 cut(s)	262, 641
StyD4I	CCNGG	2 cut(s)	138, 349
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	75, 248, 393
TasI	AATT	4 cut(s)	332, 456, 486, 765
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	68, 335, 609, 644
Tru9I	TTAA	4 cut(s)	68, 335, 609, 644
TseI	GCWGC	5 cut(s)	8, 110, 155, 364, 539
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	4 cut(s)	102, 306, 543, 662
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.