Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

18044365 .. 18046274

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAATCCTATGATGAGATTTTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGTGTCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGCCTTCTCCTGTGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACCAAAGATCATCCCCTGACCCAGTGGTTCATGAATGTTTCAGAAGCTAATGAACTTCTACAACTGGCTGTGGCTCATCAGCAGATGAGCATTTCTCTCTCTGAAATTTCTGGATATATAGTAAGGAGCTTAGACCTGATTGATGTTATAAATTTTGTTGCATTTTTGAGAATGGCATATATAGGTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGGTAATTTCCTACCTTCCTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

208

Amino Acids

23.0

Weight (kDa)

5.11

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	264, 310
AcuI	CTGAAG	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	131, 352, 427, 517
AluBI	AGCT	8 cut(s)	53, 206, 288, 368, 377, 398, 442, 461
AluI	AGCT	8 cut(s)	53, 206, 288, 368, 377, 398, 442, 461
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	413, 474
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	264, 310
AsuHPI	GGTGA	3 cut(s)	59, 167, 411
BalI	TGGCCA	1 cut(s)	415
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	3 cut(s)	424, 553, 571
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	548
BmuI	ACTGGG	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	585
Bse1I	ACTGG	3 cut(s)	125, 181, 228
Bse8I	GATNNNNATC	1 cut(s)	585
BseGI	GGATG	3 cut(s)	169, 582, 586
BseJI	GATNNNNATC	1 cut(s)	585
BseMII	CTCAG	3 cut(s)	21, 390, 585
BseNI	ACTGG	3 cut(s)	125, 181, 228
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	415, 476
BsmI	GAATGC	2 cut(s)	550, 562
BsnI	GGCC	2 cut(s)	415, 476
Bsp143I	GATC	2 cut(s)	133, 166
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	2 cut(s)	415, 476
BspCNI	CTCAG	3 cut(s)	22, 391, 586
BspHI	TCATGA	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	125, 181, 228
BssMI	GATC	2 cut(s)	133, 166
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	30, 289, 399, 594
BstF5I	GGATG	3 cut(s)	169, 582, 586
BstKTI	GATC	2 cut(s)	136, 169
BstMBI	GATC	2 cut(s)	133, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	415, 476
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	169, 582, 586
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	189
CviAII	CATG	2 cut(s)	190, 362
DdeI	CTNAG	4 cut(s)	30, 289, 399, 594
DpnI	GATC	2 cut(s)	135, 168
DpnII	GATC	2 cut(s)	133, 166
EaeI	YGGCCR	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	21
FaeI	CATG	2 cut(s)	193, 365
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FatI	CATG	2 cut(s)	189, 361
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	156, 589, 593
Fsp4HI	GCNGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	415, 476
Hin1II	CATG	2 cut(s)	193, 365
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	3 cut(s)	5, 64, 106
HphI	GGTGA	3 cut(s)	59, 167, 411
Hpy188I	TCNGA	6 cut(s)	40, 202, 262, 556, 568, 595
Hpy188III	TCNNGA	4 cut(s)	61, 190, 270, 514
HpyAV	CCTTC	3 cut(s)	45, 123, 620
HpyCH4V	TGCA	4 cut(s)	320, 374, 539, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	4 cut(s)	30, 289, 399, 594
Hsp92II	CATG	2 cut(s)	193, 365
Kzo9I	GATC	2 cut(s)	133, 166
LmnI	GCTCC	2 cut(s)	285, 365
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	155, 527
MalI	GATC	2 cut(s)	135, 168
MboI	GATC	2 cut(s)	133, 166
MboII	GAAGA	2 cut(s)	143, 517
MflI	RGATCY	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	3 cut(s)	264, 310, 600
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	8 cut(s)	91, 146, 414, 442, 445, 478, 492, 589
Mox20I	TGGCCA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	2 cut(s)	444, 479
MslI	CAYNNNNRTG	2 cut(s)	360, 555
Msp20I	TGGCCA	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	398
Mva1269I	GAATGC	2 cut(s)	550, 562
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	133, 166
NlaIII	CATG	2 cut(s)	193, 365
NmuCI	GTSAC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	476
PctI	GAATGC	2 cut(s)	550, 562
PfeI	GAWTC	2 cut(s)	5, 64
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	360, 555
SaqAI	TTAA	2 cut(s)	444, 479
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	133, 166
SchI	GAGTC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	548
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	360, 555
Sse9I	AATT	3 cut(s)	264, 310, 600
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	476
TasI	AATT	3 cut(s)	264, 310, 600
TfiI	GAWTC	2 cut(s)	5, 64
Tru1I	TTAA	2 cut(s)	444, 479
Tru9I	TTAA	2 cut(s)	444, 479
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	178, 206, 225
TspGWI	ACGGA	2 cut(s)	378, 497
TspRI	CASTG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	264, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.