Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

69187963 .. 69205265

Gene Structure 17303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG492700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGATTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGGGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCGAGGCGAAGTAGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCTGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATCGATGACAATCTTTCTGAGCAAATGGCGAGGCAAGAGCAAGACCCAGTTGATCAAGAAGATGGTAGCGCTGATTTCACTGATGGGTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

259

Amino Acids

27.83

Weight (kDa)

6.11

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 101	3.3e-15	Ankyrin repeats (3 copies)
Ank_4	PF13637	3 - 47	3.8e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	68 - 99	9.6e-06	Ankyrin repeats (many copies)
Ank	PF00023	75 - 104	2.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	1 cut(s)	414
AciI	CCGC	4 cut(s)	153, 318, 356, 633
AclWI	GGATC	3 cut(s)	376, 436, 692
AcoI	YGGCCR	2 cut(s)	121, 521
AfaI	GTAC	1 cut(s)	273
AfeI	AGCGCT	1 cut(s)	754
AgsI	TTSAA	5 cut(s)	50, 312, 460, 535, 625
AjnI	CCWGG	2 cut(s)	138, 331
AluBI	AGCT	7 cut(s)	176, 296, 476, 485, 506, 550, 569
AluI	AGCT	7 cut(s)	176, 296, 476, 485, 506, 550, 569
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	3 cut(s)	376, 436, 692
Aor51HI	AGCGCT	1 cut(s)	754
AoxI	GGCC	5 cut(s)	121, 141, 260, 521, 582
ApeKI	GCWGC	6 cut(s)	8, 110, 155, 327, 346, 482
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	416, 755
AsuHPI	GGTGA	1 cut(s)	519
BalI	TGGCCA	2 cut(s)	123, 523
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	97, 142, 314, 333, 494
BccI	CCATC	6 cut(s)	209, 419, 532, 661, 740, 761
BcgI	CGANNNNNNTGC	4 cut(s)	217, 251, 636, 670
BciT130I	CCWGG	2 cut(s)	140, 333
BclI	TGATCA	1 cut(s)	736
BfoI	RGCGCY	1 cut(s)	756
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	9, 111, 156, 328, 347, 357, 483
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	7 cut(s)	10, 112, 157, 329, 348, 358, 484
Bme1390I	CCNGG	2 cut(s)	140, 333
BmrFI	CCNGG	2 cut(s)	140, 333
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	254, 656
BmuI	ACTGGG	1 cut(s)	725
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 285, 315
Bse1I	ACTGG	2 cut(s)	319, 731
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	140, 333
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	693
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	498, 693
BseNI	ACTGG	2 cut(s)	319, 731
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	5 cut(s)	97, 142, 314, 333, 494
BsgI	GTGCAG	2 cut(s)	426, 501
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	123, 143, 262, 523, 584
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	298
BsmI	GAATGC	3 cut(s)	444, 658, 670
BsnI	GGCC	5 cut(s)	123, 143, 262, 523, 584
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	4 cut(s)	153, 318, 356, 633
BspANI	GGCC	5 cut(s)	123, 143, 262, 523, 584
BspCNI	CTCAG	2 cut(s)	499, 694
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	414
BspPI	GGATC	3 cut(s)	376, 436, 692
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	319, 731
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
BssNAI	GTATAC	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	140, 333
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	507, 702
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	2 cut(s)	416, 755
BstKTI	GATC	6 cut(s)	27, 371, 412, 431, 687, 739
BstMBI	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
BstMWI	GCNNNNNNNGC	6 cut(s)	259, 324, 336, 404, 413, 482
BstNI	CCWGG	2 cut(s)	140, 333
BstSCI	CCNGG	2 cut(s)	138, 331
BstSNI	TACGTA	1 cut(s)	275
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	5 cut(s)	97, 142, 314, 333, 494
BstX2I	RGATCY	2 cut(s)	24, 368
BstYI	RGATCY	2 cut(s)	24, 368
BstZ17I	GTATAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	5 cut(s)	123, 143, 262, 523, 584
BsuTUI	ATCGAT	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	2 cut(s)	416, 755
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	7 cut(s)	17, 30, 125, 170, 183, 399, 470
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	507, 702
DpnI	GATC	6 cut(s)	26, 370, 411, 430, 686, 738
DpnII	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
EaeI	YGGCCR	2 cut(s)	121, 521
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	296
Eco105I	TACGTA	1 cut(s)	275
Eco147I	AGGCCT	2 cut(s)	262, 584
Eco24I	GRGCYC	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	138, 331
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	7 cut(s)	20, 33, 128, 173, 186, 402, 473
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	7 cut(s)	16, 29, 124, 169, 182, 398, 469
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	7 cut(s)	9, 111, 156, 328, 347, 357, 483
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	7 cut(s)	9, 111, 156, 328, 347, 357, 483
GlaI	GCGC	2 cut(s)	415, 754
GluI	GCNGC	7 cut(s)	9, 111, 156, 328, 347, 357, 483
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	5 cut(s)	123, 143, 262, 523, 584
HhaI	GCGC	2 cut(s)	416, 755
Hin1II	CATG	7 cut(s)	20, 33, 128, 173, 186, 402, 473
Hin6I	GCGC	2 cut(s)	414, 753
HinP1I	GCGC	2 cut(s)	414, 753
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	2 cut(s)	43, 77
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	2 cut(s)	272, 383
Hpy188I	TCNGA	3 cut(s)	664, 676, 703
Hpy188III	TCNNGA	4 cut(s)	47, 374, 622, 740
Hpy8I	GTNNAC	2 cut(s)	272, 383
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	9 cut(s)	11, 16, 103, 238, 349, 407, 482, 647, 670
HpyF10VI	GCNNNNNNNGC	6 cut(s)	259, 324, 336, 404, 413, 482
HpyF3I	CTNAG	2 cut(s)	507, 702
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	7 cut(s)	20, 33, 128, 173, 186, 402, 473
HspAI	GCGC	2 cut(s)	414, 753
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
LmnI	GCTCC	4 cut(s)	56, 224, 293, 473
Lsp1109I	GCAGC	5 cut(s)	97, 142, 314, 333, 494
LweI	GCATC	2 cut(s)	254, 656
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	6 cut(s)	26, 370, 411, 430, 686, 738
MboI	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
MboII	GAAGA	3 cut(s)	102, 625, 755
MflI	RGATCY	2 cut(s)	24, 368
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	2 cut(s)	123, 523
MluNI	TGGCCA	2 cut(s)	123, 523
Mox20I	TGGCCA	2 cut(s)	123, 523
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	123, 523
MseI	TTAA	3 cut(s)	68, 552, 587
MslI	CAYNNNNRTG	2 cut(s)	468, 663
Msp20I	TGGCCA	2 cut(s)	123, 523
MspA1I	CMGCKG	2 cut(s)	155, 506
MspR9I	CCNGG	2 cut(s)	140, 333
Mva1269I	GAATGC	3 cut(s)	444, 658, 670
MvaI	CCWGG	2 cut(s)	140, 333
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	6 cut(s)	259, 324, 336, 404, 413, 482
NdeII	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
NlaIII	CATG	7 cut(s)	20, 33, 128, 173, 186, 402, 473
NsiI	ATGCAT	1 cut(s)	18
PceI	AGGCCT	2 cut(s)	262, 584
PctI	GAATGC	3 cut(s)	444, 658, 670
PfeI	GAWTC	2 cut(s)	43, 77
PkrI	GCNGC	7 cut(s)	10, 112, 157, 329, 348, 358, 484
Ppu21I	YACGTR	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	138, 331
PspGI	CCWGG	2 cut(s)	138, 331
PsuI	RGATCY	2 cut(s)	24, 368
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	2 cut(s)	468, 663
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	68, 552, 587
SatI	GCNGC	7 cut(s)	9, 111, 156, 328, 347, 357, 483
Sau3AI	GATC	6 cut(s)	24, 368, 409, 428, 684, 736
ScrFI	CCNGG	2 cut(s)	140, 333
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	178, 277, 298, 478, 487, 508, 532, 552, 571
SfaNI	GCATC	2 cut(s)	254, 656
SmiMI	CAYNNNNRTG	2 cut(s)	468, 663
SnaBI	TACGTA	1 cut(s)	275
SseBI	AGGCCT	2 cut(s)	262, 584
SsiI	CCGC	4 cut(s)	153, 318, 356, 633
SspI	AATATT	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	298
StuI	AGGCCT	2 cut(s)	262, 584
StyD4I	CCNGG	2 cut(s)	138, 331
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	75, 248, 687
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	43, 77
Tru1I	TTAA	3 cut(s)	68, 552, 587
Tru9I	TTAA	3 cut(s)	68, 552, 587
TscAI	CASTG	1 cut(s)	769
TseI	GCWGC	6 cut(s)	8, 110, 155, 327, 346, 482
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	4 cut(s)	102, 306, 486, 605
TspRI	CASTG	1 cut(s)	769
VspI	ATTAAT	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.