Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

52013575 .. 52034306

Gene Structure 20732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG371900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGGGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCTGTTGCATTTAGCATCGAGGCGAAGTAGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGGGAAGAATTAAACTCAAACTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTCGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGGCTCAAAGAGATGGATCGGGGTATAATTCCATTTCCATCAATATTCAAAAATCAAATTCTGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGCTTGAACCAATTAGCAGAACTAAGCAGTCATTATATGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

273

Amino Acids

29.63

Weight (kDa)

7.65

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	2 - 57	7.6e-11	Ankyrin repeats (3 copies)
Ank_4	PF13637	7 - 52	7.4e-08	Ankyrin repeats (many copies)
Ank_2	PF12796	57 - 148	1.7e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	6 cut(s)	11, 168, 333, 377, 389, 705
AclWI	GGATC	2 cut(s)	409, 468
AcoI	YGGCCR	2 cut(s)	136, 593
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	7 cut(s)	65, 327, 493, 532, 607, 697, 782
AjnI	CCWGG	2 cut(s)	153, 364
AluBI	AGCT	9 cut(s)	58, 191, 311, 548, 557, 578, 622, 641, 778
AluI	AGCT	9 cut(s)	58, 191, 311, 548, 557, 578, 622, 641, 778
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	409, 468
AoxI	GGCC	5 cut(s)	136, 156, 275, 593, 654
ApeKI	GCWGC	5 cut(s)	23, 125, 170, 379, 554
ApoI	RAATTY	1 cut(s)	501
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	815
BalI	TGGCCA	2 cut(s)	138, 595
BanII	GRGCYC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	5 cut(s)	10, 112, 157, 366, 566
BccI	CCATC	6 cut(s)	224, 451, 490, 604, 733, 751
BcgI	CGANNNNNNTGC	4 cut(s)	232, 266, 708, 742
BciT130I	CCWGG	2 cut(s)	155, 366
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	6 cut(s)	24, 126, 171, 380, 390, 555
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	6 cut(s)	25, 127, 172, 381, 391, 556
Bme1390I	CCNGG	2 cut(s)	155, 366
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	155, 366
BmsI	GCATC	2 cut(s)	269, 728
BpmI	CTGGAG	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	364
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 93, 300, 330
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	155, 366
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	2 cut(s)	762, 766
BseJI	GATNNNNATC	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	497, 570, 765
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	5 cut(s)	10, 112, 157, 366, 566
BsgI	GTGCAG	2 cut(s)	459, 573
BshFI	GGCC	5 cut(s)	138, 158, 277, 595, 656
BsiHKAI	GWGCWC	1 cut(s)	313
BsmI	GAATGC	3 cut(s)	516, 730, 742
BsnI	GGCC	5 cut(s)	138, 158, 277, 595, 656
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	39, 401, 442, 460
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	6 cut(s)	11, 168, 333, 377, 389, 705
BspANI	GGCC	5 cut(s)	138, 158, 277, 595, 656
BspCNI	CTCAG	3 cut(s)	498, 571, 766
BspPI	GGATC	2 cut(s)	409, 468
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	4 cut(s)	39, 401, 442, 460
BssNAI	GTATAC	1 cut(s)	416
Bst1107I	GTATAC	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	155, 366
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	4 cut(s)	506, 579, 774, 798
BstF5I	GGATG	2 cut(s)	762, 766
BstKTI	GATC	4 cut(s)	42, 404, 445, 463
BstMBI	GATC	4 cut(s)	39, 401, 442, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 369, 437, 554
BstNI	CCWGG	2 cut(s)	155, 366
BstSCI	CCNGG	2 cut(s)	153, 364
BstSNI	TACGTA	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	10, 112, 157, 366, 566
BstX2I	RGATCY	2 cut(s)	39, 401
BstYI	RGATCY	2 cut(s)	39, 401
BstZ17I	GTATAC	1 cut(s)	416
BsuRI	GGCC	5 cut(s)	138, 158, 277, 595, 656
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	762, 766
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	7 cut(s)	32, 45, 140, 185, 198, 432, 542
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	4 cut(s)	506, 579, 774, 798
DpnI	GATC	4 cut(s)	41, 403, 444, 462
DpnII	GATC	4 cut(s)	39, 401, 442, 460
EaeI	YGGCCR	2 cut(s)	136, 593
EciI	GGCGGA	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	311
Eco105I	TACGTA	1 cut(s)	290
Eco147I	AGGCCT	2 cut(s)	277, 656
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	153, 364
EcoT22I	ATGCAT	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	7 cut(s)	35, 48, 143, 188, 201, 435, 545
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FatI	CATG	7 cut(s)	31, 44, 139, 184, 197, 431, 541
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	6 cut(s)	24, 126, 171, 380, 390, 555
FokI	GGATG	2 cut(s)	769, 773
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	24, 126, 171, 380, 390, 555
GluI	GCNGC	6 cut(s)	24, 126, 171, 380, 390, 555
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	5 cut(s)	138, 158, 277, 595, 656
Hin1II	CATG	7 cut(s)	35, 48, 143, 188, 201, 435, 545
HindIII	AAGCTT	2 cut(s)	56, 639
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	591
Hpy166II	GTNNAC	2 cut(s)	287, 416
Hpy188I	TCNGA	4 cut(s)	507, 736, 748, 775
Hpy188III	TCNNGA	3 cut(s)	62, 407, 694
Hpy8I	GTNNAC	2 cut(s)	287, 416
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	9 cut(s)	26, 31, 118, 253, 382, 440, 554, 719, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 369, 437, 554
HpyF3I	CTNAG	4 cut(s)	506, 579, 774, 798
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	7 cut(s)	35, 48, 143, 188, 201, 435, 545
Kzo9I	GATC	4 cut(s)	39, 401, 442, 460
LmnI	GCTCC	4 cut(s)	71, 239, 308, 545
LpnPI	CCDG	9 cut(s)	140, 167, 260, 291, 315, 351, 378, 572, 638
Lsp1109I	GCAGC	5 cut(s)	10, 112, 157, 366, 566
LweI	GCATC	2 cut(s)	269, 728
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	4 cut(s)	41, 403, 444, 462
MboI	GATC	4 cut(s)	39, 401, 442, 460
MboII	GAAGA	3 cut(s)	117, 356, 697
MflI	RGATCY	2 cut(s)	39, 401
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	2 cut(s)	138, 595
MluCI	AATT	4 cut(s)	347, 471, 501, 786
MluNI	TGGCCA	2 cut(s)	138, 595
MnlI	CCTC	9 cut(s)	161, 258, 389, 413, 594, 622, 625, 658, 672
Mox20I	TGGCCA	2 cut(s)	138, 595
Mph1103I	ATGCAT	1 cut(s)	33
MscI	TGGCCA	2 cut(s)	138, 595
MseI	TTAA	5 cut(s)	83, 350, 624, 659, 820
MslI	CAYNNNNRTG	2 cut(s)	540, 735
Msp20I	TGGCCA	2 cut(s)	138, 595
MspA1I	CMGCKG	3 cut(s)	170, 379, 578
MspR9I	CCNGG	2 cut(s)	155, 366
Mva1269I	GAATGC	3 cut(s)	516, 730, 742
MvaI	CCWGG	2 cut(s)	155, 366
MwoI	GCNNNNNNNGC	4 cut(s)	274, 369, 437, 554
NdeII	GATC	4 cut(s)	39, 401, 442, 460
NlaIII	CATG	7 cut(s)	35, 48, 143, 188, 201, 435, 545
NsiI	ATGCAT	1 cut(s)	33
PceI	AGGCCT	2 cut(s)	277, 656
PctI	GAATGC	3 cut(s)	516, 730, 742
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	25, 127, 172, 381, 391, 556
Ppu21I	YACGTR	1 cut(s)	290
PshBI	ATTAAT	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	153, 364
PspGI	CCWGG	2 cut(s)	153, 364
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	39, 401
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	2 cut(s)	540, 735
SacI	GAGCTC	1 cut(s)	313
SaqAI	TTAA	5 cut(s)	83, 350, 624, 659, 820
SatI	GCNGC	6 cut(s)	24, 126, 171, 380, 390, 555
Sau3AI	GATC	4 cut(s)	39, 401, 442, 460
Sau96I	GGNCC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	155, 366
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	269, 728
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	540, 735
SnaBI	TACGTA	1 cut(s)	290
Sse9I	AATT	4 cut(s)	347, 471, 501, 786
SseBI	AGGCCT	2 cut(s)	277, 656
SsiI	CCGC	6 cut(s)	11, 168, 333, 377, 389, 705
SspI	AATATT	2 cut(s)	223, 489
SstI	GAGCTC	1 cut(s)	313
StuI	AGGCCT	2 cut(s)	277, 656
StyD4I	CCNGG	2 cut(s)	153, 364
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	90, 263, 408
TasI	AATT	4 cut(s)	347, 471, 501, 786
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	5 cut(s)	83, 350, 624, 659, 820
Tru9I	TTAA	5 cut(s)	83, 350, 624, 659, 820
TseI	GCWGC	5 cut(s)	23, 125, 170, 379, 554
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	4 cut(s)	117, 321, 558, 677
VpaK11BI	GGWCC	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.