Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

49800531 .. 49801860

Gene Structure 1330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGAAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCAATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACAAGGATTGTTGGCATGGGGTGCATATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCATCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGGTAATTTCCTACCTTCCTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

197

Amino Acids

21.25

Weight (kDa)

6.54

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 52	3.4e-07	Ankyrin repeats (3 copies)
Ank_4	PF13637	3 - 47	1.1e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	153, 203, 215, 492
AclWI	GGATC	2 cut(s)	235, 295
AcoI	YGGCCR	2 cut(s)	121, 380
AgsI	TTSAA	4 cut(s)	50, 319, 394, 484
AjnI	CCWGG	2 cut(s)	138, 190
AluBI	AGCT	7 cut(s)	43, 176, 335, 344, 365, 409, 428
AluI	AGCT	7 cut(s)	43, 176, 335, 344, 365, 409, 428
AlwI	GGATC	2 cut(s)	235, 295
AoxI	GGCC	4 cut(s)	121, 141, 380, 441
ApeKI	GCWGC	6 cut(s)	8, 110, 155, 186, 205, 341
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	378
BalI	TGGCCA	2 cut(s)	123, 382
BbvI	GCAGC	5 cut(s)	97, 142, 173, 192, 353
BccI	CCATC	5 cut(s)	278, 364, 391, 520, 538
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciT130I	CCWGG	2 cut(s)	140, 192
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	9, 111, 156, 187, 206, 216, 342
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	7 cut(s)	10, 112, 157, 188, 207, 217, 343
Bme1390I	CCNGG	2 cut(s)	140, 192
BmrFI	CCNGG	2 cut(s)	140, 192
BmsI	GCATC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	140, 192
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	549, 553
BseJI	GATNNNNATC	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	357, 552
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	5 cut(s)	97, 142, 173, 192, 353
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	123, 143, 382, 443
BsmI	GAATGC	3 cut(s)	303, 517, 529
BsnI	GGCC	4 cut(s)	123, 143, 382, 443
Bsp143I	GATC	3 cut(s)	24, 227, 287
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	4 cut(s)	153, 203, 215, 492
BspANI	GGCC	4 cut(s)	123, 143, 382, 443
BspCNI	CTCAG	2 cut(s)	358, 553
BspFNI	CGCG	1 cut(s)	273
BspPI	GGATC	2 cut(s)	235, 295
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	24, 227, 287
BssNAI	GTATAC	1 cut(s)	242
Bst1107I	GTATAC	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	140, 192
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	366, 561
BstF5I	GGATG	2 cut(s)	549, 553
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	27, 230, 290
BstMBI	GATC	3 cut(s)	24, 227, 287
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 263, 272, 341
BstNI	CCWGG	2 cut(s)	140, 192
BstSCI	CCNGG	2 cut(s)	138, 190
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	97, 142, 173, 192, 353
BstX2I	RGATCY	2 cut(s)	24, 227
BstYI	RGATCY	2 cut(s)	24, 227
BstZ17I	GTATAC	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	123, 143, 382, 443
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	549, 553
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	275
CviAII	CATG	7 cut(s)	17, 30, 125, 170, 183, 258, 329
DdeI	CTNAG	2 cut(s)	366, 561
DpnI	GATC	3 cut(s)	26, 229, 289
DpnII	GATC	3 cut(s)	24, 227, 287
EaeI	YGGCCR	2 cut(s)	121, 380
Eco147I	AGGCCT	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	138, 190
EcoT22I	ATGCAT	1 cut(s)	18
FaeI	CATG	7 cut(s)	20, 33, 128, 173, 186, 261, 332
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	7 cut(s)	16, 29, 124, 169, 182, 257, 328
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	7 cut(s)	9, 111, 156, 187, 206, 216, 342
FokI	GGATG	2 cut(s)	556, 560
Fsp4HI	GCNGC	7 cut(s)	9, 111, 156, 187, 206, 216, 342
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	7 cut(s)	9, 111, 156, 187, 206, 216, 342
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	4 cut(s)	123, 143, 382, 443
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	7 cut(s)	20, 33, 128, 173, 186, 261, 332
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	2 cut(s)	41, 426
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	378
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	523, 535, 562
Hpy188III	TCNNGA	4 cut(s)	47, 86, 233, 481
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	92, 587
HpyCH4V	TGCA	8 cut(s)	11, 16, 103, 208, 266, 341, 506, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 263, 272, 341
HpyF3I	CTNAG	2 cut(s)	366, 561
Hsp92II	CATG	7 cut(s)	20, 33, 128, 173, 186, 261, 332
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	24, 227, 287
LmnI	GCTCC	2 cut(s)	56, 332
LpnPI	CCDG	7 cut(s)	125, 152, 177, 204, 218, 359, 425
Lsp1109I	GCAGC	5 cut(s)	97, 142, 173, 192, 353
LweI	GCATC	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	26, 229, 289
MboI	GATC	3 cut(s)	24, 227, 287
MboII	GAAGA	1 cut(s)	484
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	2 cut(s)	24, 227
MlsI	TGGCCA	2 cut(s)	123, 382
MluCI	AATT	2 cut(s)	130, 567
MluNI	TGGCCA	2 cut(s)	123, 382
MnlI	CCTC	8 cut(s)	146, 215, 381, 409, 412, 445, 459, 556
Mox20I	TGGCCA	2 cut(s)	123, 382
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	123, 382
MseI	TTAA	3 cut(s)	68, 411, 446
MslI	CAYNNNNRTG	2 cut(s)	327, 522
Msp20I	TGGCCA	2 cut(s)	123, 382
MspA1I	CMGCKG	3 cut(s)	155, 205, 365
MspR9I	CCNGG	2 cut(s)	140, 192
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	3 cut(s)	303, 517, 529
MvaI	CCWGG	2 cut(s)	140, 192
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	195, 263, 272, 341
NdeII	GATC	3 cut(s)	24, 227, 287
NlaIII	CATG	7 cut(s)	20, 33, 128, 173, 186, 261, 332
NsiI	ATGCAT	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	3 cut(s)	303, 517, 529
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	7 cut(s)	10, 112, 157, 188, 207, 217, 343
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	138, 190
PspGI	CCWGG	2 cut(s)	138, 190
PsuI	RGATCY	2 cut(s)	24, 227
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	327, 522
SaqAI	TTAA	3 cut(s)	68, 411, 446
SatI	GCNGC	7 cut(s)	9, 111, 156, 187, 206, 216, 342
Sau3AI	GATC	3 cut(s)	24, 227, 287
ScrFI	CCNGG	2 cut(s)	140, 192
SfaNI	GCATC	1 cut(s)	515
SmiMI	CAYNNNNRTG	2 cut(s)	327, 522
Sse9I	AATT	2 cut(s)	130, 567
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	153, 203, 215, 492
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	138, 190
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	130, 567
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	68, 411, 446
Tru9I	TTAA	3 cut(s)	68, 411, 446
TseI	GCWGC	6 cut(s)	8, 110, 155, 186, 205, 341
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	464
VspI	ATTAAT	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.