Rroxscaffold_1G00038780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001131
Physical Location & Seq
Reverse (-)
56277626 .. 56278055
430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038780.1

Sequence Viewer

Length: 183 bp
ATGGGTTGTGCTTTTCTCTTGAGCAGTGATGGTGCAGCTTCATTGGTGCTAGTGAGTGGGGAAAAGGCACTTGAACTTGGGTTACATGCTCTTGTTCTTCATTCCTCCGGAAAACCAACCCCTTTGGTATTGTATCATGCTCTTCTGCTGCAATATGTGCTAACTCGTGAAGCTTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.29

Weight (kDa)

6.22

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 107
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 38, 173
AluI AGCT 2 cut(s) 38, 173
Aor13HI TCCGGA 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 35, 148
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 2 cut(s) 47, 135
BccI CCATC 1 cut(s) 23
BfaI CTAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 36, 149
BlsI GCNGC 2 cut(s) 37, 150
BpuEI CTTGAG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 107
BseXI GCAGC 2 cut(s) 47, 135
BsgI GTGCAG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 47, 135
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
CviAII CATG 2 cut(s) 86, 137
CviJI RGCY 2 cut(s) 38, 173
CviKI_1 RGCY 2 cut(s) 38, 173
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
FaeI CATG 2 cut(s) 89, 140
FaiI YATR 3 cut(s) 87, 138, 156
FatI CATG 2 cut(s) 85, 136
Fnu4HI GCNGC 2 cut(s) 36, 149
Fsp4HI GCNGC 2 cut(s) 36, 149
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 36, 149
HapII CCGG 1 cut(s) 108
Hin1II CATG 2 cut(s) 89, 140
HindIII AAGCTT 1 cut(s) 171
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 19, 108, 167
HpyCH4V TGCA 2 cut(s) 35, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 89, 140
Kpn2I TCCGGA 1 cut(s) 107
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 1 cut(s) 121
Lsp1109I GCAGC 2 cut(s) 47, 135
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 81
MboII GAAGA 2 cut(s) 89, 134
MnlI CCTC 1 cut(s) 115
MroI TCCGGA 1 cut(s) 107
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 157
NlaIII CATG 2 cut(s) 89, 140
NspI RCATGY 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 37, 150
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 2 cut(s) 36, 149
SetI ASST 2 cut(s) 40, 175
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SspMI CTAG 1 cut(s) 50
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 35, 148
TspDTI ATGAA 2 cut(s) 30, 89
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.