Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

36442118 .. 36445278

Gene Structure 3161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTCAGGGGCTGAGTTGCGGAGAGCCTCGGGAGATTGGTCTGTTTGGGGCTGTGGAAAATGGGGACTTGGAGGTGGTTCAGGATATGGTGGAAGCTGACCCGAGTGTTTTGGACCAGAGAAAAGGCCGTGGCAAGCTTTCTGCTATGCATGTAGCCGCTGCTGCTGGTCGGATCGAGGTGCTGTCTATGCTTTTGGATCGGTCTATTAGTCCGGATGTGGTGAATCGCCATAAGCAGACTCCGCTGATGTTGGCTGCAATGCATGGGAATATCGCTTGCGTTAGAAAGCTAATCCAAGCAGGAGCAAATATATTGATGTTCGATTCCTTCAATGGAAGAACTTGCCTGCATTATGCTGCGTATTATGGTTATTCAGACTGCCTCCAAGCCTTTTTATCCGCCGCACAATCCACCACTGTTGCAAATTCTTGGGGATTTGCAAGATTTGTGAATATTAGAGATGGAGGTGGAGCAACCCCATTGCACTTGGCTGCCCGTCAAAAACGGGCCGAGTGTGTGCATGTTCTTTTGGATAGTGGGGCGCTTGTTTGTGCTTCAACTGGTGGATACAGCTACCCTGGAAGCACACCACTTCATTTAGCAGCTCGTGCTGGTTCTTTAGATTGCGTCAGAGAGTTGCTTGCTTGGGGAGCAGATCGGCTTCAGTTAGACTCATCAGGATCTATATCCATTAAACCCATACAAGCTAGCGATGTGGATCTATGCTGCATATGCTTTGACCAGTTATGCACAATTGAGGTTGGACCATGTGGTCATCAAATGTGTGCACATTGCACCCTTGCCCTATGCTGCCACAAGAAGCCCAACCCCTCATCTATATCTTGCCCTCCAGTCCCTGTTTGCCCCTTTTGTCGGACCAGCATCGCCCAACTAGTTGTTGCTGATATCAAGGCCAACAACGATGTGGAGGTGGAAATGAGTCCCTCAAAACCAAGGAAATCAAGAAAGTCTAATGTCAGTGAAGGCAGCAGCAGCTTCAAGGGCCTGTCGCCTTTGGGCTCATTTGGAAGATTGGGTGGTCGCAATTCAGGAAGGGTATCTGCTGAATGCAATGAAGACATCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4

Protein Analysis

364

Amino Acids

38.61

Weight (kDa)

7.79

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 106	1.2e-14	Ankyrin repeats (3 copies)
Ank_4	PF13637	50 - 99	7.5e-09	Ankyrin repeats (many copies)
Ank	PF00023	80 - 107	2.9e-06	Ankyrin repeat
Ank_4	PF13637	85 - 133	4.5e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	152 - 220	1.7e-11	Ankyrin repeats (3 copies)
Ank	PF00023	158 - 187	9.3e-06	Ankyrin repeat
Ank	PF00023	195 - 225	2e-07	Ankyrin repeat
RING_XB3-XBAT31	PF24921	242 - 298	4e-21	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	774
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	21, 159, 245, 402, 405
AclWI	GGATC	4 cut(s)	182, 207, 691, 729
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	650
AfiI	CCNNNNNNNGG	1 cut(s)	876
AgsI	TTSAA	3 cut(s)	334, 561, 1003
AhlI	ACTAGT	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	7 cut(s)	98, 139, 292, 576, 608, 710, 999
AluI	AGCT	7 cut(s)	98, 139, 292, 576, 608, 710, 999
Alw21I	GWGCWC	1 cut(s)	793
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	4 cut(s)	182, 207, 691, 729
AlwNI	CAGNNNCTG	2 cut(s)	13, 860
Ama87I	CYCGRG	2 cut(s)	30, 103
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	4 cut(s)	127, 510, 915, 1006
ApaLI	GTGCAC	1 cut(s)	789
ApoI	RAATTY	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	5 cut(s)	115, 510, 767, 879, 1006
AsuHPI	GGTGA	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	710
AvaI	CYCGRG	2 cut(s)	30, 103
AvaII	GGWCC	3 cut(s)	115, 767, 879
BaeGI	GKGCMC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	1025
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	1086
Bbv12I	GWGCWC	1 cut(s)	793
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	563
BcuI	ACTAGT	1 cut(s)	895
BfaI	CTAG	2 cut(s)	711, 896
BfoI	RGCGCY	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	3 cut(s)	115, 767, 879
BmeT110I	CYCGRG	2 cut(s)	30, 103
BmgT120I	GGNCC	5 cut(s)	115, 510, 767, 879, 1006
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	894
BmtI	GCTAGC	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	1086
BpmI	CTGGAG	1 cut(s)	837
BsaBI	GATNNNNATC	2 cut(s)	688, 720
BsaJI	CCNNGG	4 cut(s)	29, 130, 580, 956
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	876
Bse1I	ACTGG	3 cut(s)	568, 745, 854
Bse3DI	GCAATG	4 cut(s)	267, 482, 793, 1081
Bse8I	GATNNNNATC	2 cut(s)	688, 720
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	29, 130, 580, 956
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	2 cut(s)	688, 720
BseLI	CCNNNNNNNGG	1 cut(s)	876
BseMI	GCAATG	4 cut(s)	267, 482, 793, 1081
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	3 cut(s)	568, 745, 854
BseSI	GKGCMC	1 cut(s)	793
BshFI	GGCC	4 cut(s)	129, 512, 917, 1008
BsiHKAI	GWGCWC	1 cut(s)	793
BsiHKCI	CYCGRG	2 cut(s)	30, 103
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	3 cut(s)	80, 842, 930
BslI	CCNNNNNNNGG	1 cut(s)	876
BsmFI	GGGAC	3 cut(s)	80, 842, 930
BsmI	GAATGC	1 cut(s)	1076
BsnI	GGCC	4 cut(s)	129, 512, 917, 1008
BsoBI	CYCGRG	2 cut(s)	30, 103
Bsp1286I	GDGCHC	2 cut(s)	793, 1025
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	5 cut(s)	174, 199, 658, 683, 721
BspACI	CCGC	5 cut(s)	21, 159, 245, 402, 405
BspANI	GGCC	4 cut(s)	129, 512, 917, 1008
BspCNI	CTCAG	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	4 cut(s)	182, 207, 691, 729
BsrDI	GCAATG	4 cut(s)	267, 482, 793, 1081
BsrI	ACTGG	3 cut(s)	568, 745, 854
BssECI	CCNNGG	4 cut(s)	29, 130, 580, 956
BssMI	GATC	5 cut(s)	174, 199, 658, 683, 721
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	956
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	5 cut(s)	137, 280, 350, 645, 712
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	5 cut(s)	177, 202, 661, 686, 724
BstMBI	GATC	5 cut(s)	174, 199, 658, 683, 721
BstMWI	GCNNNNNNNGC	8 cut(s)	164, 190, 244, 611, 653, 735, 996, 1005
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	155, 527
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	793
BstV2I	GAAGAC	1 cut(s)	1086
BstX2I	RGATCY	2 cut(s)	683, 721
BstYI	RGATCY	2 cut(s)	683, 721
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	129, 512, 917, 1008
BtgI	CCRYGG	1 cut(s)	130
BtgZI	GCGATG	2 cut(s)	729, 871
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	417, 988
Cac8I	GCNNGC	5 cut(s)	137, 280, 350, 645, 712
CaiI	CAGNNNCTG	2 cut(s)	13, 860
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	5 cut(s)	115, 510, 767, 879, 1006
CseI	GACGC	1 cut(s)	619
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	4 cut(s)	152, 266, 524, 771
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	5 cut(s)	176, 201, 660, 685, 723
DpnII	GATC	5 cut(s)	174, 199, 658, 683, 721
DrdI	GACNNNNNNGTC	1 cut(s)	774
DseDI	GACNNNNNNGTC	1 cut(s)	774
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	956
Eco24I	GRGCYC	1 cut(s)	1025
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	3 cut(s)	115, 767, 879
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	2 cut(s)	30, 103
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	956
EcoT22I	ATGCAT	2 cut(s)	153, 267
EcoT38I	GRGCYC	1 cut(s)	1025
ErhI	CCWWGG	1 cut(s)	956
FaeI	CATG	4 cut(s)	155, 269, 527, 774
FaqI	GGGAC	3 cut(s)	80, 842, 930
FatI	CATG	4 cut(s)	151, 265, 523, 770
FauNDI	CATATG	1 cut(s)	734
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	1025
FspBI	CTAG	2 cut(s)	711, 896
GlaI	GCGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	4 cut(s)	129, 512, 917, 1008
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	4 cut(s)	155, 269, 527, 774
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	5 cut(s)	226, 241, 326, 674, 943
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	791
Hpy188I	TCNGA	4 cut(s)	174, 379, 635, 879
Hpy188III	TCNNGA	6 cut(s)	32, 83, 215, 681, 966, 1053
Hpy8I	GTNNAC	1 cut(s)	791
HpyAV	CCTTC	3 cut(s)	340, 980, 1050
HpyCH4III	ACNGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	8 cut(s)	164, 190, 244, 611, 653, 735, 996, 1005
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	155, 269, 527, 774
HspAI	GCGC	1 cut(s)	545
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	174, 199, 658, 683, 721
LmnI	GCTCC	3 cut(s)	305, 473, 653
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	2 cut(s)	711, 896
MalI	GATC	5 cut(s)	176, 201, 660, 685, 723
MboI	GATC	5 cut(s)	174, 199, 658, 683, 721
MboII	GAAGA	3 cut(s)	351, 1044, 1091
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	2 cut(s)	683, 721
MhlI	GDGCHC	2 cut(s)	793, 1025
MluCI	AATT	3 cut(s)	427, 756, 1048
MlyI	GAGTC	3 cut(s)	235, 668, 952
MmeI	TCCRAC	3 cut(s)	152, 745, 857
Mph1103I	ATGCAT	2 cut(s)	153, 267
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	2 cut(s)	161, 247
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	1076
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	8 cut(s)	164, 190, 244, 611, 653, 735, 996, 1005
NdeI	CATATG	1 cut(s)	734
NdeII	GATC	5 cut(s)	174, 199, 658, 683, 721
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	4 cut(s)	155, 269, 527, 774
NmeAIII	GCCGAG	1 cut(s)	538
NsiI	ATGCAT	2 cut(s)	153, 267
NspI	RCATGY	2 cut(s)	155, 527
PctI	GAATGC	1 cut(s)	1076
PfeI	GAWTC	2 cut(s)	226, 326
PleI	GAGTC	3 cut(s)	235, 668, 951
PpsI	GAGTC	3 cut(s)	235, 668, 951
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	5 cut(s)	115, 510, 767, 879, 1006
PstNI	CAGNNNCTG	2 cut(s)	13, 860
PsuI	RGATCY	2 cut(s)	683, 721
SaqAI	TTAA	1 cut(s)	696
Sau3AI	GATC	5 cut(s)	174, 199, 658, 683, 721
Sau96I	GGNCC	5 cut(s)	115, 510, 767, 879, 1006
SchI	GAGTC	3 cut(s)	235, 668, 952
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	793, 1025
SfaNI	GCATC	1 cut(s)	894
SinI	GGWCC	3 cut(s)	115, 767, 879
SpeI	ACTAGT	1 cut(s)	895
Sse9I	AATT	3 cut(s)	427, 756, 1048
SsiI	CCGC	5 cut(s)	21, 159, 245, 402, 405
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	2 cut(s)	711, 896
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	177, 324
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	427, 756, 1048
TauI	GCSGC	2 cut(s)	161, 407
TfiI	GAWTC	2 cut(s)	226, 326
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	2 cut(s)	424, 988
TspDTI	ATGAA	2 cut(s)	587, 1092
TspRI	CASTG	2 cut(s)	424, 988
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	3 cut(s)	115, 767, 879
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	2 cut(s)	155, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XspI	CTAG	2 cut(s)	711, 896
Zsp2I	ATGCAT	2 cut(s)	153, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.